Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00323 GATGCATTGTGGCAAATGAACTTGAGATCAAGCGAAACAATGGAAGGTGGGCCATATCCTGAGCGTCAAGGAGAGCCAGATTGTTCTTATTACATCAGAACCGGCATATGTAGATTCGGAGCAACATGCCGTTTTAATCATCCTCCTGACAGAAAGCTGGCTATTGCCACTGCAAGGATGAAGGGGGAATATCCTGAGAGAATCGGACAGCCGGAATGTCAGGCATTGTTGCAATTGTATTCTTTTCAGTACTACCTGAAGACTGGAACCTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGATATCCGCTTCGCCCGAACGAGATTGAATGTGGTTATTATTTAAGAACTGGGACGTGCAAATTCGCAAGTATGTGTAAATTCCATCACCCTCAACCGTCTAATATGATGGTTCCATTACGCGGTTCTCCTATTTATCCAACTGTCCAGTCTCCAACTACTAGTCCACAATCGTATCAAGGAGAAATTACAAATTGGTCAAGAGCGTCTTTTATTCCAAGTCCAAGATGGCAAGGCCCCTCTAGTTATGCGCCTGTTATTCTACCGCAAGGACTAGTTTCCGTTCAAGGTTGGAATGCATACAATGGTCCTCTGGGATCAGTTTCTTCTTCAGAGAGTCAGCAACAAACATCGACAATCAGTCAGGTTTACGGAGCTTCACGTCAAAACGAATCTGGTAGTACAGTCCATGAAGTACCGTTTTCTCCATTCCGTTCAGGCTCTGTCCATGTTGGGTACTATGCATTGCAAAGGGATAATGTATTCCCTGAGCGACCTGGTGAGCCTGAGTGTCGGTTTTACATGAAAACTGGTGATTGCAAATTTGGCTTAGTCTGTCAATTCCACCATCCTAGAGAGAGACTACTACCGGCTCCAGACTGTGTTTTGAGCCCCATCGGCCTTCCCTTACGTCCGGGAGAACCTTTATGCCTCTTCTATTCTCGTTATGGTATCTGCAAGTTCGGTCCAAGCTGCAAATTCGACCACCCGATGAGAATCTTCTCATACAATTTCGCCGCATCACAGTCTTCAGATTTCTCAGTTCGTCGTTTATCGTCGGGAACATCAGCCCTAAATTTGTCCCCCGAAGGACTGATTGAAGCAGGTTCTGCAAAGCCGAGGAGGCTCTCACTATCAGAAAGTAGACAGATGTCTTCTAATGGCGACAATATTGACATAGCCGAA 1257 45.27 DALWQMNLRSSETMEGGPYPERQGEPDCSYYIRTGICRFGATCRFNHPPDRKLAIATARMKGEYPERIGQPECQALLQLYSFQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPNEIECGYYLRTGTCKFASMCKFHHPQPSNMMVPLRGSPIYPTVQSPTTSPQSYQGEITNWSRASFIPSPRWQGPSSYAPVILPQGLVSVQGWNAYNGPLGSVSSSESQQQTSTISQVYGASRQNESGSTVHEVPFSPFRSGSVHVGYYALQRDNVFPERPGEPECRFYMKTGDCKFGLVCQFHHPRERLLPAPDCVLSPIGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMRIFSYNFAASQSSDFSVRRLSSGTSALNLSPEGLIEAGSAKPRRLSLSESRQMSSNGDNIDIAE 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 5812458 5816791 - Bma030584 Bma13g00323 93052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00323 419 ProSiteProfiles Zinc finger C3H1-type profile. 22 50 IPR000571 GO:0046872
Bma13g00323 419 ProSiteProfiles Zinc finger C3H1-type profile. 328 356 IPR000571 GO:0046872
Bma13g00323 419 MobiDBLite consensus disorder prediction 396 419 - -
Bma13g00323 419 ProSiteProfiles Zinc finger C3H1-type profile. 122 150 IPR000571 GO:0046872
Bma13g00323 419 SUPERFAMILY CCCH zinc finger 331 355 IPR036855 GO:0046872
Bma13g00323 419 SUPERFAMILY CCCH zinc finger 27 50 IPR036855 GO:0046872
Bma13g00323 419 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 1 417 - -
Bma13g00323 419 Gene3D - 105 155 - -
Bma13g00323 419 SMART c3hfinal6 328 355 IPR000571 GO:0046872
Bma13g00323 419 SMART c3hfinal6 282 309 IPR000571 GO:0046872
Bma13g00323 419 SMART c3hfinal6 22 49 IPR000571 GO:0046872
Bma13g00323 419 SMART c3hfinal6 81 103 IPR000571 GO:0046872
Bma13g00323 419 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Bma13g00323 419 SUPERFAMILY CCCH zinc finger 125 150 IPR036855 GO:0046872
Bma13g00323 419 SUPERFAMILY CCCH zinc finger 286 312 IPR036855 GO:0046872
Bma13g00323 419 ProSiteProfiles Zinc finger C3H1-type profile. 282 310 IPR000571 GO:0046872
Bma13g00323 419 MobiDBLite consensus disorder prediction 400 419 - -
Bma13g00323 419 PANTHER PROTEIN PHOSPHATASE RELATED 1 417 - -
Bma13g00323 419 ProSiteProfiles Zinc finger C3H1-type profile. 83 104 IPR000571 GO:0046872
Bma13g00323 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 330 355 IPR000571 GO:0046872
Bma13g00323 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 309 IPR000571 GO:0046872
Bma13g00323 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 149 IPR000571 GO:0046872
Bma13g00323 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 83 103 IPR000571 GO:0046872
Bma13g00323 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 24 49 IPR000571 GO:0046872
Bma13g00323 419 Gene3D - 20 104 - -
Bma13g00323 419 Gene3D - 281 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00323 Bma-Chr13:5812458 Bma13g00886 Bma-Chr13:38733740 0 wgd
Bma13g00323 Bma-Chr13:5812458 Bma14g01187 Bma-Chr14:17621737 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58208 PF00642 zf-CCCH 1.50E-09 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00323 - - qsu:112012560 705.671