Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00366 ATGAGGATTATGATCAAAGGTGGTGTTTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGAATCTCCTCCCTTCTTGTTCGTAAATCGGCCAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGACCCCTCCATTAAGAAGGCAAGCAGTTTTTCGCTCACTGAGTGGACGAGAGAGGAAGATGAGAAGCTACTTCATCTTGCGAAGCTCATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGGCGGACTCCATCTCAGTGTCTTGAACGGTATGAAAAACTCCTTGATGCCGCATGCGTCAAGGATGAGAACTATCAAGCTGGTGATGACCCACGTAAGTTACGTCCAGGGGAGATAGACCCAAACCCTGAGTCCAAGCCTGCACGTCCTGATCCAGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCCAGGCTAGCGAACACCAGAGGTAAAAAGGCAAAGAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCTAGGCGACTTGCTTCCTTACAAAAAAGAAGAGAACTAAAGGCAGCTGGGATTAATAATAGACATCGGAAAAGGAAAAGGAAGGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAAGCCTCCTCCAGAAAAGAGGAAAAATGTTAAACGTTCCACACATGGACCCCTTGATGCCATTCCAGTGATTGAAGAATTTGAAGAATATGAGCTAAATGAGGCTGTTTGTTTTATAAACGAAGAAGTTCAGTACCTTCGAGTAGCAATGGGACATGAGAATGAATCCCTTGAAGAATTTGTTGAAGCACATAAAACTTGCCAGAATGATCTCATGTATTTCCCCACCCGAAATGCTTATGGTCTTTCAAGTGTCGCTGGCAATATGGAGAAGCTTGCAGCATTGCAAAATGAATTTGAGAATGTTAAAAAGAAAATGGATGACGATACGGAAAAGGCTGTACGTATGGAGAAGAAGGTCAAAGTTCTTACACATGGTTATGAGACAAGGGCCAAAACAAGCCTATGGCCTCAAATTGAAGCTACCTTCAAGCAGATGGAAACTGCTGCAACAGAGCTCCAGTGTTTTCAAGCTTTGCACAAGGAAGAGCTATTAGCTGCATCACACAGGATTAATACGCTCCGCGAAGAAGTTCAAAAGCAAAAGGAACTTGAGCAAACCTTGCAGAGGAGATATGGAGATCGGGTAATGGAGTTGGAAAGAACTCAACGCCTCATGGATCACTACAGAACTCAAGCAAAACAGCAGGAAGAAATTGCAGCTGAAAATGATGACCTTACTGAAGCTACTGCTTCTGAGACAGTGGATTTATTAGTTGATGAAAATGCTTTTCGACTAACAGGTACTATTGATGCTGCCTCAGAGAAAGAACCATCGACAGTTCGTATGGATGTTGAATTGCCCGACAATATTTCTTCTGCCTGTGAAGTGGAACCCACAAGAGTAGAACAAGAGGACCATAATGAAAATGGGATTTTGACAAATGAACACTTTGATAGCGCCGAAAAAATTTCTGAACCAGTCGCGGGTATTGAAGACACGATTGTGCAAGCGTCAGAGGACAATATTTTGACTTCCAAGGTTGAAAACAAGGATGAGCACGTCGAGCAGCATGAGCATAACCTCGACAGCGAGAACTCGAACATTGAATCGATGAAACATGATGAACGCGCGCCTAGTTTGGCGGATAATGATGGATTTAGTTCAAAGCATGACGACTAG 1791 43.5 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKASSFSLTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYQAGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINNRHRKRKRKGIDYNAEIPFEKKPPPEKRKNVKRSTHGPLDAIPVIEEFEEYELNEAVCFINEEVQYLRVAMGHENESLEEFVEAHKTCQNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVKKKMDDDTEKAVRMEKKVKVLTHGYETRAKTSLWPQIEATFKQMETAATELQCFQALHKEELLAASHRINTLREEVQKQKELEQTLQRRYGDRVMELERTQRLMDHYRTQAKQQEEIAAENDDLTEATASETVDLLVDENAFRLTGTIDAASEKEPSTVRMDVELPDNISSACEVEPTRVEQEDHNENGILTNEHFDSAEKISEPVAGIEDTIVQASEDNILTSKVENKDEHVEQHEHNLDSENSNIESMKHDERAPSLADNDGFSSKHDD 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6726982 6736140 + Bma009092.1 Bma13g00366 93095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00366 596 Coils Coil 551 578 - -
Bma13g00366 596 SUPERFAMILY Homeodomain-like 4 57 IPR009057 -
Bma13g00366 596 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bma13g00366 596 Coils Coil 422 442 - -
Bma13g00366 596 Coils Coil 308 342 - -
Bma13g00366 596 MobiDBLite consensus disorder prediction 120 156 - -
Bma13g00366 596 SMART sant 64 111 IPR001005 -
Bma13g00366 596 SMART sant 6 55 IPR001005 -
Bma13g00366 596 Pfam Myb-like DNA-binding domain 8 53 IPR001005 -
Bma13g00366 596 SUPERFAMILY Homeodomain-like 40 111 IPR009057 -
Bma13g00366 596 CDD SANT_CDC5_II 55 112 - -
Bma13g00366 596 MobiDBLite consensus disorder prediction 163 182 - -
Bma13g00366 596 Pfam Myb-like DNA-binding domain 68 113 - -
Bma13g00366 596 Gene3D - 5 59 - -
Bma13g00366 596 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 237 424 - -
Bma13g00366 596 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 227 - -
Bma13g00366 596 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bma13g00366 596 Gene3D - 63 122 - -
Bma13g00366 596 ProSiteProfiles Myb-like domain profile. 68 109 IPR001005 -
Bma13g00366 596 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 113 IPR017930 -
Bma13g00366 596 Coils Coil 173 193 - -
Bma13g00366 596 CDD SANT 10 53 IPR001005 -
Bma13g00366 596 Coils Coil 387 414 - -
Bma13g00366 596 MobiDBLite consensus disorder prediction 552 596 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00366 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - twl:120001939 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00366 Bma-Chr13:6726982 Bma13g00410 Bma-Chr13:7535108 1.22E-06 dispersed
Bma13g00366 Bma-Chr13:6726982 Bma08g00007 Bma-Chr8:171955 2.20E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00410 . 1 625 MYB-Related Transcription Factor Family AT1G09770 81.4 3.6e-280 961.1
Bma13g00366 . 1 226 MYB-Related Transcription Factor Family AT1G09770 93.4 9.9e-113 404.8
Bma08g00007 BCT,CCT 206 682 MYB-Related Transcription Factor Family AT3G18100 55.5 6.3e-150 528.1
Bma08g00007 BCT,CCT 206 682 MYB-Related Transcription Factor Family AT3G18100 55.5 6.3e-150 528.1
Bma13g00410 . 1 625 MYB-Related Transcription Factor Family AT1G09770 81.4 3.6e-280 961.1
Bma13g00366 . 1 226 MYB-Related Transcription Factor Family AT1G09770 93.4 9.9e-113 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58209 PF13921 Myb_DNA-bind_6 3.20E-09 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00366 Bma_Chr13 FPKM 16.717585 17.137737 11.121952 10.970773 35.376705 27.392164 35.755653 3.545531 3.434192 3.548094