Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00366 ATGAGGATTATGATCAAAGGTGGTGTTTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGAATCTCCTCCCTTCTTGTTCGTAAATCGGCCAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGACCCCTCCATTAAGAAGGCAAGCAGTTTTTCGCTCACTGAGTGGACGAGAGAGGAAGATGAGAAGCTACTTCATCTTGCGAAGCTCATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGGCGGACTCCATCTCAGTGTCTTGAACGGTATGAAAAACTCCTTGATGCCGCATGCGTCAAGGATGAGAACTATCAAGCTGGTGATGACCCACGTAAGTTACGTCCAGGGGAGATAGACCCAAACCCTGAGTCCAAGCCTGCACGTCCTGATCCAGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCCAGGCTAGCGAACACCAGAGGTAAAAAGGCAAAGAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCTAGGCGACTTGCTTCCTTACAAAAAAGAAGAGAACTAAAGGCAGCTGGGATTAATAATAGACATCGGAAAAGGAAAAGGAAGGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAAGCCTCCTCCAGAAAAGAGGAAAAATGTTAAACGTTCCACACATGGACCCCTTGATGCCATTCCAGTGATTGAAGAATTTGAAGAATATGAGCTAAATGAGGCTGTTTGTTTTATAAACGAAGAAGTTCAGTACCTTCGAGTAGCAATGGGACATGAGAATGAATCCCTTGAAGAATTTGTTGAAGCACATAAAACTTGCCAGAATGATCTCATGTATTTCCCCACCCGAAATGCTTATGGTCTTTCAAGTGTCGCTGGCAATATGGAGAAGCTTGCAGCATTGCAAAATGAATTTGAGAATGTTAAAAAGAAAATGGATGACGATACGGAAAAGGCTGTACGTATGGAGAAGAAGGTCAAAGTTCTTACACATGGTTATGAGACAAGGGCCAAAACAAGCCTATGGCCTCAAATTGAAGCTACCTTCAAGCAGATGGAAACTGCTGCAACAGAGCTCCAGTGTTTTCAAGCTTTGCACAAGGAAGAGCTATTAGCTGCATCACACAGGATTAATACGCTCCGCGAAGAAGTTCAAAAGCAAAAGGAACTTGAGCAAACCTTGCAGAGGAGATATGGAGATCGGGTAATGGAGTTGGAAAGAACTCAACGCCTCATGGATCACTACAGAACTCAAGCAAAACAGCAGGAAGAAATTGCAGCTGAAAATGATGACCTTACTGAAGCTACTGCTTCTGAGACAGTGGATTTATTAGTTGATGAAAATGCTTTTCGACTAACAGGTACTATTGATGCTGCCTCAGAGAAAGAACCATCGACAGTTCGTATGGATGTTGAATTGCCCGACAATATTTCTTCTGCCTGTGAAGTGGAACCCACAAGAGTAGAACAAGAGGACCATAATGAAAATGGGATTTTGACAAATGAACACTTTGATAGCGCCGAAAAAATTTCTGAACCAGTCGCGGGTATTGAAGACACGATTGTGCAAGCGTCAGAGGACAATATTTTGACTTCCAAGGTTGAAAACAAGGATGAGCACGTCGAGCAGCATGAGCATAACCTCGACAGCGAGAACTCGAACATTGAATCGATGAAACATGATGAACGCGCGCCTAGTTTGGCGGATAATGATGGATTTAGTTCAAAGCATGACGACTAG 1791 43.5 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKASSFSLTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYQAGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINNRHRKRKRKGIDYNAEIPFEKKPPPEKRKNVKRSTHGPLDAIPVIEEFEEYELNEAVCFINEEVQYLRVAMGHENESLEEFVEAHKTCQNDLMYFPTRNAYGLSSVAGNMEKLAALQNEFENVKKKMDDDTEKAVRMEKKVKVLTHGYETRAKTSLWPQIEATFKQMETAATELQCFQALHKEELLAASHRINTLREEVQKQKELEQTLQRRYGDRVMELERTQRLMDHYRTQAKQQEEIAAENDDLTEATASETVDLLVDENAFRLTGTIDAASEKEPSTVRMDVELPDNISSACEVEPTRVEQEDHNENGILTNEHFDSAEKISEPVAGIEDTIVQASEDNILTSKVENKDEHVEQHEHNLDSENSNIESMKHDERAPSLADNDGFSSKHDD 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6726982 6736140 + Bma009092.1 Bma13g00366 93095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00366 596 Coils Coil 551 578 - -
Bma13g00366 596 SUPERFAMILY Homeodomain-like 4 57 IPR009057 -
Bma13g00366 596 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bma13g00366 596 Coils Coil 422 442 - -
Bma13g00366 596 Coils Coil 308 342 - -
Bma13g00366 596 MobiDBLite consensus disorder prediction 120 156 - -
Bma13g00366 596 SMART sant 64 111 IPR001005 -
Bma13g00366 596 SMART sant 6 55 IPR001005 -
Bma13g00366 596 Pfam Myb-like DNA-binding domain 8 53 IPR001005 -
Bma13g00366 596 SUPERFAMILY Homeodomain-like 40 111 IPR009057 -
Bma13g00366 596 CDD SANT_CDC5_II 55 112 - -
Bma13g00366 596 MobiDBLite consensus disorder prediction 163 182 - -
Bma13g00366 596 Pfam Myb-like DNA-binding domain 68 113 - -
Bma13g00366 596 Gene3D - 5 59 - -
Bma13g00366 596 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 237 424 - -
Bma13g00366 596 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 227 - -
Bma13g00366 596 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bma13g00366 596 Gene3D - 63 122 - -
Bma13g00366 596 ProSiteProfiles Myb-like domain profile. 68 109 IPR001005 -
Bma13g00366 596 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 113 IPR017930 -
Bma13g00366 596 Coils Coil 173 193 - -
Bma13g00366 596 CDD SANT 10 53 IPR001005 -
Bma13g00366 596 Coils Coil 387 414 - -
Bma13g00366 596 MobiDBLite consensus disorder prediction 552 596 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00366 Bma-Chr13:6726982 Bma13g00410 Bma-Chr13:7535108 1.22E-06 dispersed
Bma13g00366 Bma-Chr13:6726982 Bma08g00007 Bma-Chr8:171955 2.20E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58209 PF13921 Myb_DNA-bind_6 3.20E-09 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00366 K12860 - twl:120001939 420.624