Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00368 ATGGGGACAAAACTTGTGCAAATTTGTGTCAAAGAAGAGAATGATGACTTTCCATCAGTTCCACCGGGCTTTGAGGCATTGACATCTTTTGCCGTCCAGAAGATAGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCATGCCTTCCACTAGTATTTCGGAAACACAATCCATTCATATGGATATTAAAACGGACAGCACTCTTGATACTAAGATAACAAGGTCCCTACGACCAAGACCATGTATTAACTATGGTCTATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGAGGGTTGAACAAAATTTATATTTGAAGCCTCCTCTTCCCAAGGGGGTAATTCGGGGTTGTGCAGAGTGCAGTACTTGCCAAAAGGTTACTGCAAGATGGCATCCCAAAGAGTCTTGCAGACCCAATATTGAGGACGCTCCCATTTTTTATCCAACTGAAGAGGACTTTGAAGATACCTTGAGATATATAGCTAGTATACGTGCAAAAGCTGAACCTTTTGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTGTCCTCTACAGGAACTAGTGAAATGGACGAGTTCCAAATTTGCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCATTGAGAAAGATGTCAAGGACCCATGGCCAAATGAAGAGAAAAAGACGAAGAAATGCACGCATGGGGGTAGATTGTGCTACGAGTAATGGAGGACTAGGAGACACAGAAAGCTTTGGATTTGAACCTGGTTTAGAGTTTACTTTGGAAACGTTTAAAAAATATGCAGATGACTTCAAAATGCAGTATTTTAGTAGCACATACGATGATTCTTTAATTGGAATTCAATTGAAAGAGAGTCATAAGCCATCGGTGGAGAATATTGAGGGGGAATATTGGCGGATGGTAGAGAAACCTACTGAGGAAATTGAAGTGTTATATGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTAGCCAAGTTGGTTCAACTTCAGATGAAAAATATGTAACATCAGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTATGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCGTGGCTGTATGTTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGCGTCCCAGGGAAGGATGCCTGCAAATTAGAGGATGCTATGAGAAAGCATTTGCCTGATCTTTTTGAGGAACAACCTGATTTACTTCATAAGCTGGTCACACAACTTTCCCCTTCCATATTAAAGTCGGAGGGGGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATTGCCATAGAATTATACCGTAAGCAAGGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACTTCAAATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCAAAATCTCTCAAGATGCGGATTGAAATGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAACAGCTTCGATGCCACTAATGAGAAGGAATGCAGTTTATGCTTTTTTGACTTGCACCTCTCTGCAGTTAGTTGCCCTTGTTCCCCAGATAAATACGCATGCTTGAATCACGCGAAGCAGTTCTGCTCCTGTGCTCAGGCTGCTAGAATTTTCCTCTTCCGATATGATATTAATGAATTGAGCATCCTTGTTGAGGCTTTGGAAGGGAAATTAAGTGCAATTTATAGATGGGCTAAACTGGACCTTGGATTGGCTCTAAGTTCTCACATCTCTAAAGACAAGATGGATAATAGTAGATTAATCAAATCATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCAAGTGGTTATCTTAAAGATTTACAGTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCCAGTGGAATTACTGGTGATATCTCTTCTCAACACAGCAATGAATTAGCAGAAACTATATCAACGTTGAAGATCAAAGAATTACTGTTGAAATCTAATGGTTTGTTAAAGGAAATTGAAAAGACAAATCATGACTTTCAATTGAGGAAAGAAGAACACAATGGTATTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCCGAAAGACGTAAAACATTGTGTAAATCCAGTTTCCAAAAAAGGAAGAGATGATAAGGCTTCAGTTTTGAAACCCAAGAATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGGATAAAGAAAAAGAAAGTTCTTTAGCGAGGCAATTAGAAGACTCCGACAGGTTGGCTGGAGCTGATACTAAGGCAATCCTTTGTTATCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTAATGGATGAGAAGGATGTCATTTATCAGCCTCAGAAGAAACTGAAAACTTGTTCAGCTCATGTTGTGCCAGTAAAAATTGACCACCCTGAAAAAAATAGGTCAATGTCAGGAAATGCTAGTCCAGAGAATGCCATTTGTAACCTAGATTCTCCGGAGGAAGGTCTAAATGGTCAAGTTCTTTCAACTCAAATATGTAGTTCTGGAAAGATCGATAACGAGGATAGGGTTTGTCTTTCAAACTTTGTGGGCAATGAAAGAAGTATACACGGAAATCTTTCTTGTTCCAAAAACAGTTTAAACAGGTACTTCCGGCAAAAGGGTCCTAGAATAGCAAAGGTCGTAAGGAGGATCAACTGTAACGTGGAGCCTTTTGAATTTGGAGTAGTGGTTTCTGGAAAGTGTTGGTCTAACAGTCTGAGCATTTTTCCTAAAGGATTTAAGAGCCGAGTCAGGTTCATAAGCGTCTTGGATCCATCGAACATGGCCTACTATGTATCAGAGATTCTTGATGCTGGAGTAGATAGACCTCTATTCATGGTTTCGCTGGAGCAATGCCCAGATGAGGTGTTTATACATGTTTCACCAGCCCGTTGTTGGGAATTAGTGAGAGAGAGAGTGAATCAAGAGATCTCTAAGCATCATTTGTTAGGAAGAATGGATCTTCCTCCATTGCAGCCTCCTAAGAGTTTAGATGGTTTTGAAATGTTTGGATTCACTTCACCAGCTATTGTGCAGGCCATTGAAGCAATGGATCAAAATCGAGTCTGCACGGAGTATTGGGACTCACGACCATATTCTCGACCTCAAATACAAATGGTACCTCCTTCGCAATCAATAACCATCAATAAAAATCCACAAAGGTTGTCAGAAAATAGAAACAATGATGGGTATTTGGCCGGAACCGATTCGATACTCCAGGGGTTATTCAAGAAGGCAAATCCAGAAGAATTGCACTCATTGTATAGCATCTTAAGTGACAAGAAGCAAAAATCTGATCAAGGGGTGGTAATAAAACTTCTCGGCGAAGAGATTCATCATCGCCCGCAATGA 3717 40.25 MGTKLVQICVKEENDDFPSVPPGFEALTSFAVQKIEDNFQRGSDNLISCMPSTSISETQSIHMDIKTDSTLDTKITRSLRPRPCINYGLYDSYCDGVFDSERVEQNLYLKPPLPKGVIRGCAECSTCQKVTARWHPKESCRPNIEDAPIFYPTEEDFEDTLRYIASIRAKAEPFGICRIVPPSSWKPPCPLQELVKWTSSKFATRVQRIDKLQNRDSLRKMSRTHGQMKRKRRRNARMGVDCATSNGGLGDTESFGFEPGLEFTLETFKKYADDFKMQYFSSTYDDSLIGIQLKESHKPSVENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISSQVGSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEDAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYRKQGRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSNNLRWKDVCGKDGVLAKSLKMRIEMECIRRNTICSSSQAVKMENSFDATNEKECSLCFFDLHLSAVSCPCSPDKYACLNHAKQFCSCAQAARIFLFRYDINELSILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMDNSRLIKSSEGAELKDLALQQSSGYLKDLQWRESFTEVPKTSSGITGDISSQHSNELAETISTLKIKELLLKSNGLLKEIEKTNHDFQLRKEEHNGIVFNLTSASGQLSPKDVKHCVNPVSKKGRDDKASVLKPKNVILLSDDEGDNEPKGSVLDKEKESSLARQLEDSDRLAGADTKAILCYHDKDTNLITPLTDAAVMDEKDVIYQPQKKLKTCSAHVVPVKIDHPEKNRSMSGNASPENAICNLDSPEEGLNGQVLSTQICSSGKIDNEDRVCLSNFVGNERSIHGNLSCSKNSLNRYFRQKGPRIAKVVRRINCNVEPFEFGVVVSGKCWSNSLSIFPKGFKSRVRFISVLDPSNMAYYVSEILDAGVDRPLFMVSLEQCPDEVFIHVSPARCWELVRERVNQEISKHHLLGRMDLPPLQPPKSLDGFEMFGFTSPAIVQAIEAMDQNRVCTEYWDSRPYSRPQIQMVPPSQSITINKNPQRLSENRNNDGYLAGTDSILQGLFKKANPEELHSLYSILSDKKQKSDQGVVIKLLGEEIHHRPQ 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6786552 6795331 - Bma009097.1 Bma13g00368 93097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00368 1238 SMART JmjN_1 146 187 IPR003349 -
Bma13g00368 1238 ProSiteProfiles FYR domain FYRN motif profile. 1002 1060 IPR003888 GO:0005634
Bma13g00368 1238 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Bma13g00368 1238 Pfam JmjC domain, hydroxylase 383 499 IPR003347 -
Bma13g00368 1238 SMART fyrn_3 1016 1060 IPR003888 GO:0005634
Bma13g00368 1238 SMART fyrc_3 1066 1160 IPR003889 GO:0005634
Bma13g00368 1238 PANTHER LYSINE-SPECIFIC DEMETHYLASE 815 1235 - -
Bma13g00368 1238 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 703 - -
Bma13g00368 1238 SUPERFAMILY Clavaminate synthase-like 321 543 - -
Bma13g00368 1238 PANTHER JUMONJI 14-RELATED 815 1235 - -
Bma13g00368 1238 PANTHER JUMONJI 14-RELATED 81 703 - -
Bma13g00368 1238 SMART cupin_9 350 516 IPR003347 -
Bma13g00368 1238 MobiDBLite consensus disorder prediction 831 859 - -
Bma13g00368 1238 Pfam C5HC2 zinc finger 606 656 IPR004198 -
Bma13g00368 1238 ProSiteProfiles JmjC domain profile. 350 516 IPR003347 -
Bma13g00368 1238 Gene3D Cupin 132 500 - -
Bma13g00368 1238 ProSiteProfiles FYR domain FYRC motif profile. 1062 1152 IPR003889 GO:0005634
Bma13g00368 1238 Pfam F/Y-rich N-terminus 1015 1057 IPR003888 GO:0005634
Bma13g00368 1238 Pfam F/Y rich C-terminus 1064 1148 IPR003889 GO:0005634
Bma13g00368 1238 Gene3D - 1010 1146 - -
Bma13g00368 1238 MobiDBLite consensus disorder prediction 220 241 - -
Bma13g00368 1238 Pfam jmjN domain 148 181 IPR003349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00368 - - - mcha:111018179 1523.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00587 Bma-Chr9:43024875 Bma13g00368 Bma-Chr13:6786552 0 dispersed
Bma13g00368 Bma-Chr13:6786552 Bma13g00412 Bma-Chr13:7580213 0 dispersed
Bma13g00368 Bma-Chr13:6786552 Bma01g01602 Bma-Chr1:41342084 7.64E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00368 . 1 1236 JUMONJI Transcription Factor Family AT1G08620 52.8 0.0e+00 1225.3
Bma01g01602 . 3 925 JUMONJI Transcription Factor Family AT1G30810 50.3 3.1e-244 841.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58210 PF02373 JmjC 3.40E-46 CL0029 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00368 Bma_Chr13 FPKM 1.390124 2.030486 1.175703 1.561459 5.583457 4.385157 5.549185 0.762298 0.452601 0.8191