Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00368 ATGGGGACAAAACTTGTGCAAATTTGTGTCAAAGAAGAGAATGATGACTTTCCATCAGTTCCACCGGGCTTTGAGGCATTGACATCTTTTGCCGTCCAGAAGATAGAAGATAATTTTCAACGAGGAAGTGACAATTTGATTAGTTGCATGCCTTCCACTAGTATTTCGGAAACACAATCCATTCATATGGATATTAAAACGGACAGCACTCTTGATACTAAGATAACAAGGTCCCTACGACCAAGACCATGTATTAACTATGGTCTATACGACAGCTACTGTGATGGTGTATTTGATTCTGAGAGGGTTGAACAAAATTTATATTTGAAGCCTCCTCTTCCCAAGGGGGTAATTCGGGGTTGTGCAGAGTGCAGTACTTGCCAAAAGGTTACTGCAAGATGGCATCCCAAAGAGTCTTGCAGACCCAATATTGAGGACGCTCCCATTTTTTATCCAACTGAAGAGGACTTTGAAGATACCTTGAGATATATAGCTAGTATACGTGCAAAAGCTGAACCTTTTGGGATCTGTCGCATTGTTCCTCCCTCTTCTTGGAAACCTCCCTGTCCTCTACAGGAACTAGTGAAATGGACGAGTTCCAAATTTGCTACTCGTGTCCAGAGGATTGACAAACTTCAGAATCGAGATTCATTGAGAAAGATGTCAAGGACCCATGGCCAAATGAAGAGAAAAAGACGAAGAAATGCACGCATGGGGGTAGATTGTGCTACGAGTAATGGAGGACTAGGAGACACAGAAAGCTTTGGATTTGAACCTGGTTTAGAGTTTACTTTGGAAACGTTTAAAAAATATGCAGATGACTTCAAAATGCAGTATTTTAGTAGCACATACGATGATTCTTTAATTGGAATTCAATTGAAAGAGAGTCATAAGCCATCGGTGGAGAATATTGAGGGGGAATATTGGCGGATGGTAGAGAAACCTACTGAGGAAATTGAAGTGTTATATGGGGCAGATATTGAAACCGGAGTTTTTGGTAGCGGTTTTCCTAAAATTTCTAGCCAAGTTGGTTCAACTTCAGATGAAAAATATGTAACATCAGGTTGGAATTTGAACAATTTTCCAAGGCTTCCTGGATCTGTTCTTTCCTATGAAAGCAGTGATATTTCAGGTGTTTTGGTGCCGTGGCTGTATGTTGGGATGTGCTTTTCATCCTTTTGCTGGCATGTTGAAGATCATCACCTATATTCATTGAATTACATGCATTGGGGTGATCCAAAAATTTGGTATGGCGTCCCAGGGAAGGATGCCTGCAAATTAGAGGATGCTATGAGAAAGCATTTGCCTGATCTTTTTGAGGAACAACCTGATTTACTTCATAAGCTGGTCACACAACTTTCCCCTTCCATATTAAAGTCGGAGGGGGTTCCTGTATATAGGTGCACTCAAAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGAGCATATCATTCAGGATTCAATTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTTGCACCAGTTGATTGGTTACCACATGGTCAAATTGCCATAGAATTATACCGTAAGCAAGGAAGAAGAACTTCTATTTCCCATGATAAGTTATTGCTTGGAGCTGCTAGAGAAGCTGTAAAAGCACATTGGGAGCTTAATTTACTGAAGAAGAATACTTCAAATAATTTAAGGTGGAAAGATGTCTGCGGAAAAGATGGGGTTTTAGCAAAATCTCTCAAGATGCGGATTGAAATGGAGTGTATCCGACGCAATACTATATGCAGTTCTTCACAGGCAGTGAAGATGGAGAACAGCTTCGATGCCACTAATGAGAAGGAATGCAGTTTATGCTTTTTTGACTTGCACCTCTCTGCAGTTAGTTGCCCTTGTTCCCCAGATAAATACGCATGCTTGAATCACGCGAAGCAGTTCTGCTCCTGTGCTCAGGCTGCTAGAATTTTCCTCTTCCGATATGATATTAATGAATTGAGCATCCTTGTTGAGGCTTTGGAAGGGAAATTAAGTGCAATTTATAGATGGGCTAAACTGGACCTTGGATTGGCTCTAAGTTCTCACATCTCTAAAGACAAGATGGATAATAGTAGATTAATCAAATCATCTGAAGGAGCAGAACTTAAAGATTTGGCATTACAACAATCAAGTGGTTATCTTAAAGATTTACAGTGGAGGGAATCATTTACAGAGGTTCCAAAAACTTCCAGTGGAATTACTGGTGATATCTCTTCTCAACACAGCAATGAATTAGCAGAAACTATATCAACGTTGAAGATCAAAGAATTACTGTTGAAATCTAATGGTTTGTTAAAGGAAATTGAAAAGACAAATCATGACTTTCAATTGAGGAAAGAAGAACACAATGGTATTGTTTTCAATTTGACATCTGCAAGTGGCCAGTTGTCTCCGAAAGACGTAAAACATTGTGTAAATCCAGTTTCCAAAAAAGGAAGAGATGATAAGGCTTCAGTTTTGAAACCCAAGAATGTAATACTCCTAAGTGACGATGAAGGTGATAATGAGCCTAAAGGGTCAGTTTTGGATAAAGAAAAAGAAAGTTCTTTAGCGAGGCAATTAGAAGACTCCGACAGGTTGGCTGGAGCTGATACTAAGGCAATCCTTTGTTATCATGATAAAGATACAAACTTGATCACCCCATTGACTGATGCAGCAGTAATGGATGAGAAGGATGTCATTTATCAGCCTCAGAAGAAACTGAAAACTTGTTCAGCTCATGTTGTGCCAGTAAAAATTGACCACCCTGAAAAAAATAGGTCAATGTCAGGAAATGCTAGTCCAGAGAATGCCATTTGTAACCTAGATTCTCCGGAGGAAGGTCTAAATGGTCAAGTTCTTTCAACTCAAATATGTAGTTCTGGAAAGATCGATAACGAGGATAGGGTTTGTCTTTCAAACTTTGTGGGCAATGAAAGAAGTATACACGGAAATCTTTCTTGTTCCAAAAACAGTTTAAACAGGTACTTCCGGCAAAAGGGTCCTAGAATAGCAAAGGTCGTAAGGAGGATCAACTGTAACGTGGAGCCTTTTGAATTTGGAGTAGTGGTTTCTGGAAAGTGTTGGTCTAACAGTCTGAGCATTTTTCCTAAAGGATTTAAGAGCCGAGTCAGGTTCATAAGCGTCTTGGATCCATCGAACATGGCCTACTATGTATCAGAGATTCTTGATGCTGGAGTAGATAGACCTCTATTCATGGTTTCGCTGGAGCAATGCCCAGATGAGGTGTTTATACATGTTTCACCAGCCCGTTGTTGGGAATTAGTGAGAGAGAGAGTGAATCAAGAGATCTCTAAGCATCATTTGTTAGGAAGAATGGATCTTCCTCCATTGCAGCCTCCTAAGAGTTTAGATGGTTTTGAAATGTTTGGATTCACTTCACCAGCTATTGTGCAGGCCATTGAAGCAATGGATCAAAATCGAGTCTGCACGGAGTATTGGGACTCACGACCATATTCTCGACCTCAAATACAAATGGTACCTCCTTCGCAATCAATAACCATCAATAAAAATCCACAAAGGTTGTCAGAAAATAGAAACAATGATGGGTATTTGGCCGGAACCGATTCGATACTCCAGGGGTTATTCAAGAAGGCAAATCCAGAAGAATTGCACTCATTGTATAGCATCTTAAGTGACAAGAAGCAAAAATCTGATCAAGGGGTGGTAATAAAACTTCTCGGCGAAGAGATTCATCATCGCCCGCAATGA 3717 40.25 MGTKLVQICVKEENDDFPSVPPGFEALTSFAVQKIEDNFQRGSDNLISCMPSTSISETQSIHMDIKTDSTLDTKITRSLRPRPCINYGLYDSYCDGVFDSERVEQNLYLKPPLPKGVIRGCAECSTCQKVTARWHPKESCRPNIEDAPIFYPTEEDFEDTLRYIASIRAKAEPFGICRIVPPSSWKPPCPLQELVKWTSSKFATRVQRIDKLQNRDSLRKMSRTHGQMKRKRRRNARMGVDCATSNGGLGDTESFGFEPGLEFTLETFKKYADDFKMQYFSSTYDDSLIGIQLKESHKPSVENIEGEYWRMVEKPTEEIEVLYGADIETGVFGSGFPKISSQVGSTSDEKYVTSGWNLNNFPRLPGSVLSYESSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKIWYGVPGKDACKLEDAMRKHLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCTQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYRKQGRRTSISHDKLLLGAAREAVKAHWELNLLKKNTSNNLRWKDVCGKDGVLAKSLKMRIEMECIRRNTICSSSQAVKMENSFDATNEKECSLCFFDLHLSAVSCPCSPDKYACLNHAKQFCSCAQAARIFLFRYDINELSILVEALEGKLSAIYRWAKLDLGLALSSHISKDKMDNSRLIKSSEGAELKDLALQQSSGYLKDLQWRESFTEVPKTSSGITGDISSQHSNELAETISTLKIKELLLKSNGLLKEIEKTNHDFQLRKEEHNGIVFNLTSASGQLSPKDVKHCVNPVSKKGRDDKASVLKPKNVILLSDDEGDNEPKGSVLDKEKESSLARQLEDSDRLAGADTKAILCYHDKDTNLITPLTDAAVMDEKDVIYQPQKKLKTCSAHVVPVKIDHPEKNRSMSGNASPENAICNLDSPEEGLNGQVLSTQICSSGKIDNEDRVCLSNFVGNERSIHGNLSCSKNSLNRYFRQKGPRIAKVVRRINCNVEPFEFGVVVSGKCWSNSLSIFPKGFKSRVRFISVLDPSNMAYYVSEILDAGVDRPLFMVSLEQCPDEVFIHVSPARCWELVRERVNQEISKHHLLGRMDLPPLQPPKSLDGFEMFGFTSPAIVQAIEAMDQNRVCTEYWDSRPYSRPQIQMVPPSQSITINKNPQRLSENRNNDGYLAGTDSILQGLFKKANPEELHSLYSILSDKKQKSDQGVVIKLLGEEIHHRPQ 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 6786552 6795331 - Bma009097.1 Bma13g00368 93097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00368 1238 SMART JmjN_1 146 187 IPR003349 -
Bma13g00368 1238 ProSiteProfiles FYR domain FYRN motif profile. 1002 1060 IPR003888 GO:0005634
Bma13g00368 1238 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Bma13g00368 1238 Pfam JmjC domain, hydroxylase 383 499 IPR003347 -
Bma13g00368 1238 SMART fyrn_3 1016 1060 IPR003888 GO:0005634
Bma13g00368 1238 SMART fyrc_3 1066 1160 IPR003889 GO:0005634
Bma13g00368 1238 PANTHER LYSINE-SPECIFIC DEMETHYLASE 815 1235 - -
Bma13g00368 1238 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 703 - -
Bma13g00368 1238 SUPERFAMILY Clavaminate synthase-like 321 543 - -
Bma13g00368 1238 PANTHER JUMONJI 14-RELATED 815 1235 - -
Bma13g00368 1238 PANTHER JUMONJI 14-RELATED 81 703 - -
Bma13g00368 1238 SMART cupin_9 350 516 IPR003347 -
Bma13g00368 1238 MobiDBLite consensus disorder prediction 831 859 - -
Bma13g00368 1238 Pfam C5HC2 zinc finger 606 656 IPR004198 -
Bma13g00368 1238 ProSiteProfiles JmjC domain profile. 350 516 IPR003347 -
Bma13g00368 1238 Gene3D Cupin 132 500 - -
Bma13g00368 1238 ProSiteProfiles FYR domain FYRC motif profile. 1062 1152 IPR003889 GO:0005634
Bma13g00368 1238 Pfam F/Y-rich N-terminus 1015 1057 IPR003888 GO:0005634
Bma13g00368 1238 Pfam F/Y rich C-terminus 1064 1148 IPR003889 GO:0005634
Bma13g00368 1238 Gene3D - 1010 1146 - -
Bma13g00368 1238 MobiDBLite consensus disorder prediction 220 241 - -
Bma13g00368 1238 Pfam jmjN domain 148 181 IPR003349 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00587 Bma-Chr9:43024875 Bma13g00368 Bma-Chr13:6786552 0 dispersed
Bma13g00368 Bma-Chr13:6786552 Bma13g00412 Bma-Chr13:7580213 0 dispersed
Bma13g00368 Bma-Chr13:6786552 Bma01g01602 Bma-Chr1:41342084 7.64E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58210 PF02373 JmjC 3.40E-46 CL0029 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00368 - - mcha:111018179 1523.06