Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma13g00373 | TTAGGATCACGTAATTCTTCGTTTGACAATCAAAGGGAAGATCCTCTGCATCGAATTCCAGGGAGGATGTTCTTGAATGGATCTAGTGAAGTTGCTTCTTTGTTCACTCAACAGGGTAGGAAAGGGACCAACCAAGATGCCATGATTGTTTGGGAGAATTTCAGTTCAAGAAGTGACACGATCTTCTGTGGGGTGTTTGATGGGCACGGACCGTATGGCCATATGGTTGCAAGGAAAGTGAGGGACTCTCTTCCCCTGAAAGTGAAAGCCCAGTGGGAATTCAATTCAGTGTCTGAAGAAGTTCTCCCAGAACTCAGTCCTAATGCTAATGGAGGAACAATCCTGGATGACGACGAAGGAGTAGCTGGAGCCGCCATTGTCGGCACCCTATTGGAGAAGCCTGCCGAAAGTTTTCGTACATTGAAGGAATCGTTTTTAAAGGCTTCTAAACTTATGGACAGAGAATTGAGGATGCACCCGAATATTGATTGTTTCTGTAGCGGGACTACGGCCGTGACTTTGGTCAAGCAGGGGGGAAATCTTGTTATTGGAAATGTTGGAGATTCCAGAGCTGTAATGGCTACCAGAGATGAAGATGACTCCCTTGTTGCAGTTCAGTTGACTGTTGATCTGAAACCAAATCTTCCTGGTTAG | 654 | 45.72 | LGSRNSSFDNQREDPLHRIPGRMFLNGSSEVASLFTQQGRKGTNQDAMIVWENFSSRSDTIFCGVFDGHGPYGHMVARKVRDSLPLKVKAQWEFNSVSEEVLPELSPNANGGTILDDDEGVAGAAIVGTLLEKPAESFRTLKESFLKASKLMDRELRMHPNIDCFCSGTTAVTLVKQGGNLVIGNVGDSRAVMATRDEDDSLVAVQLTVDLKPNLPG | 217 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 6888273 | 6889869 | + | Bma009104.1 | Bma13g00373 | 93102 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma13g00373 | 217 | ProSiteProfiles | PPM-type phosphatase domain profile. | 31 | 217 | IPR001932 | - | |
| Bma13g00373 | 217 | CDD | PP2Cc | 31 | 216 | IPR001932 | - | |
| Bma13g00373 | 217 | Pfam | Protein phosphatase 2C | 37 | 216 | IPR001932 | - | |
| Bma13g00373 | 217 | PANTHER | PROTEIN PHOSPHATASE 2C 33-RELATED | 1 | 216 | - | - | |
| Bma13g00373 | 217 | SUPERFAMILY | PP2C-like | 24 | 216 | IPR036457 | - | |
| Bma13g00373 | 217 | SMART | PP2C_4 | 20 | 217 | IPR001932 | - | |
| Bma13g00373 | 217 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 216 | - | - | |
| Bma13g00373 | 217 | Gene3D | - | 27 | 217 | IPR036457 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma13g00373 | Bma-Chr13:6888273 | Bma14g01170 | Bma-Chr14:17105289 | 2.47E-128 | dispersed | |
| Bma13g00370 | Bma-Chr13:6866969 | Bma13g00373 | Bma-Chr13:6888273 | 3.66E-156 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma13g00373 | - | - | cic:CICLE_v100115762m | 320.472 |