Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00410 ATGAGGATTATGATCAAAGGTGGTGTTTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGAATCTCCTCCCTTCTCGTTCGTAAATCGGCCAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGACCCCTCCATTAAGAAGACTGAGTGGACGAGAGAGGAAGATGAGAAGCTACTTCATCTTGCGAAGCTCATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGGCGGACTCCATCTCAGTGTCTTGAACGGTATGAAAAACTCCTTGATGCCGCATGCGTCAAGGATGAGAACTATGAAGCTGGTGATGACCCACGTAAGTTACGTCCAGGGGAGATAGACCCAAACCCTGAGTCCAAGCCTGCACGTCCTGATCCAGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCCAGGCTAGCGAACACCAGAGGTAAAAAGGCAAAGAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCTAGGCGACTTGCTTCCTTACAAAAAAGAAGAGAACTAAAGGCAGCTGGGATTAATAATAGACATCGGAAAAGGAAAAGGAAGGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAAGCCTCCTCCAGGGTTTTTTGATGTCAGTGAGGAAGATAGGCCTGTGGAGCAACCTAAATTCCCAACCACAATTGAAGAACTGGAAGGGAAAAGAAGAGTTGATGTGGAAGCACAATTAAGAAAGCAAGATATTGCAAAGGGGAGAATTGCACAAAGACTGGATGCTCCGACAGCTATATTGCAAGCGAAAAAATTAAATGATCCTGAAACAGTTAGGAAAAGATCAAAACTAATGCTTCCTGTACCTCAAATTTCTGATCATGAATTAGAGGAAATTGCAAAGATGGGTTATGCTAGTGATCTTCTTACTGGAAGTGAGGAACTCACAGAAGGTAGTGGAGCAACACATGCTCTTCTTGCAAATTATGCACAAACGCCACGACAAGGAATGACACCTTTTCGAACTCCACAAAGAACTCCTGCTGGTAAGGGAGATTCAATAATGATGGAAGCAGAAAATCTGGCTAGGTTGAGAGAGTCGCAAACACCATTATTAGGAGGAGAGAATCCAGAGTTGCATCCTTCAGATTTTTCAGGGGTCACTCCCAAGCGAAAAGAAATACAGACGCCAAATCCTACTTTGACTCCCATGGCAACTTCTGGAGTCCCTGGTCTTACTCCAAAAAGTGGTATGACACCATCTAGGGATGGTTATAACTTTGGAATGACTCCAAAGGTCACTCCAATTAGGGATGATCAACATATCAATGAAGACATGGATATTCATGATAATGCTAAACATGAGCTAAGGAGACAAGCTGATTTGAGGAGGACTTTACGTTTAGGTTTGAGCGTTCTTCCACAGCCCAAGAATGAGTATCAAATAGTCATGCAACCAGTTCCAGAAGATAATGAGGAACCAGAGGAGAAAATAGAGGAGGATATGTCGGATAGGATTGCTAGAGAGAGAGCTGAGGAAGAAGCGAGACAGCAAGCATTACTTAGGAAGAGATCTAATGTACTTCAGCGAGAGCTTCCCAGACCTCCTGTCGCTTCATTGGAATTGATTAGGAATTCTTTAATGAGAGCTGATGGAGATAAGAGCTCGTTTGTTCCTCCTACATCCATTGAGCAGGCTGATGAAATGATTAGGAAGGAGATTGTATCGCTCCTGGAGCATGACAATGCAAAGTATCCTCTTGACGATAAAATGAACAAGGAAAAGAGGAAAAATGTTAAACGTTCCACACATGGACCCCTTGATGCCATTCCCGTGATTGAATAA 1878 43.45 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEAGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINNRHRKRKRKGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKGRIAQRLDAPTAILQAKKLNDPETVRKRSKLMLPVPQISDHELEEIAKMGYASDLLTGSEELTEGSGATHALLANYAQTPRQGMTPFRTPQRTPAGKGDSIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKEIQTPNPTLTPMATSGVPGLTPKSGMTPSRDGYNFGMTPKVTPIRDDQHINEDMDIHDNAKHELRRQADLRRTLRLGLSVLPQPKNEYQIVMQPVPEDNEEPEEKIEEDMSDRIARERAEEEARQQALLRKRSNVLQRELPRPPVASLELIRNSLMRADGDKSSFVPPTSIEQADEMIRKEIVSLLEHDNAKYPLDDKMNKEKRKNVKRSTHGPLDAIPVIE 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7535108 7537638 + Bma009154.1 Bma13g00410 93139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00410 625 CDD SANT_CDC5_II 55 106 - -
Bma13g00410 625 MobiDBLite consensus disorder prediction 157 176 - -
Bma13g00410 625 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Bma13g00410 625 PANTHER - 1 624 - -
Bma13g00410 625 Gene3D - 5 59 - -
Bma13g00410 625 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 400 423 - -
Bma13g00410 625 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 624 - -
Bma13g00410 625 Gene3D - 60 116 - -
Bma13g00410 625 Coils Coil 167 187 - -
Bma13g00410 625 SMART sant 58 105 IPR001005 -
Bma13g00410 625 SMART sant 6 55 IPR001005 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 113 150 - -
Bma13g00410 625 Pfam pre-mRNA splicing factor component 407 611 IPR021786 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 597 625 - -
Bma13g00410 625 SUPERFAMILY Homeodomain-like 33 105 IPR009057 -
Bma13g00410 625 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 381 423 - -
Bma13g00410 625 CDD SANT 10 53 IPR001005 -
Bma13g00410 625 Pfam Myb-like DNA-binding domain 10 70 - -
Bma13g00410 625 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00366 Bma-Chr13:6726982 Bma13g00410 Bma-Chr13:7535108 1.22E-06 dispersed
Bma13g00410 Bma-Chr13:7535108 Bma01g02549 Bma-Chr1:83154880 2.60E-08 dispersed
Bma13g00410 Bma-Chr13:7535108 Bma08g00007 Bma-Chr8:171955 2.51E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58211 PF11831 Myb_Cef 2.80E-49 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00410 K12860 - csv:101205030 1082.78