Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00410 ATGAGGATTATGATCAAAGGTGGTGTTTGGAAGAACACCGAGGATGAGATCCTCAAAGCTGCTGTTATGAAATATGGCAAAAATCAGTGGGCTCGAATCTCCTCCCTTCTCGTTCGTAAATCGGCCAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGACCCCTCCATTAAGAAGACTGAGTGGACGAGAGAGGAAGATGAGAAGCTACTTCATCTTGCGAAGCTCATGCCAACACAGTGGAGAACTATTGCTCCCATTGTTGGGCGGACTCCATCTCAGTGTCTTGAACGGTATGAAAAACTCCTTGATGCCGCATGCGTCAAGGATGAGAACTATGAAGCTGGTGATGACCCACGTAAGTTACGTCCAGGGGAGATAGACCCAAACCCTGAGTCCAAGCCTGCACGTCCTGATCCAGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCCAGGCTAGCGAACACCAGAGGTAAAAAGGCAAAGAGGAAAGCAAGAGAGAAACAGCTTGAAGAAGCTAGGCGACTTGCTTCCTTACAAAAAAGAAGAGAACTAAAGGCAGCTGGGATTAATAATAGACATCGGAAAAGGAAAAGGAAGGGAATAGATTATAATGCTGAAATTCCATTTGAGAAGAAGCCTCCTCCAGGGTTTTTTGATGTCAGTGAGGAAGATAGGCCTGTGGAGCAACCTAAATTCCCAACCACAATTGAAGAACTGGAAGGGAAAAGAAGAGTTGATGTGGAAGCACAATTAAGAAAGCAAGATATTGCAAAGGGGAGAATTGCACAAAGACTGGATGCTCCGACAGCTATATTGCAAGCGAAAAAATTAAATGATCCTGAAACAGTTAGGAAAAGATCAAAACTAATGCTTCCTGTACCTCAAATTTCTGATCATGAATTAGAGGAAATTGCAAAGATGGGTTATGCTAGTGATCTTCTTACTGGAAGTGAGGAACTCACAGAAGGTAGTGGAGCAACACATGCTCTTCTTGCAAATTATGCACAAACGCCACGACAAGGAATGACACCTTTTCGAACTCCACAAAGAACTCCTGCTGGTAAGGGAGATTCAATAATGATGGAAGCAGAAAATCTGGCTAGGTTGAGAGAGTCGCAAACACCATTATTAGGAGGAGAGAATCCAGAGTTGCATCCTTCAGATTTTTCAGGGGTCACTCCCAAGCGAAAAGAAATACAGACGCCAAATCCTACTTTGACTCCCATGGCAACTTCTGGAGTCCCTGGTCTTACTCCAAAAAGTGGTATGACACCATCTAGGGATGGTTATAACTTTGGAATGACTCCAAAGGTCACTCCAATTAGGGATGATCAACATATCAATGAAGACATGGATATTCATGATAATGCTAAACATGAGCTAAGGAGACAAGCTGATTTGAGGAGGACTTTACGTTTAGGTTTGAGCGTTCTTCCACAGCCCAAGAATGAGTATCAAATAGTCATGCAACCAGTTCCAGAAGATAATGAGGAACCAGAGGAGAAAATAGAGGAGGATATGTCGGATAGGATTGCTAGAGAGAGAGCTGAGGAAGAAGCGAGACAGCAAGCATTACTTAGGAAGAGATCTAATGTACTTCAGCGAGAGCTTCCCAGACCTCCTGTCGCTTCATTGGAATTGATTAGGAATTCTTTAATGAGAGCTGATGGAGATAAGAGCTCGTTTGTTCCTCCTACATCCATTGAGCAGGCTGATGAAATGATTAGGAAGGAGATTGTATCGCTCCTGGAGCATGACAATGCAAAGTATCCTCTTGACGATAAAATGAACAAGGAAAAGAGGAAAAATGTTAAACGTTCCACACATGGACCCCTTGATGCCATTCCCGTGATTGAATAA 1878 43.45 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEAGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGINNRHRKRKRKGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKGRIAQRLDAPTAILQAKKLNDPETVRKRSKLMLPVPQISDHELEEIAKMGYASDLLTGSEELTEGSGATHALLANYAQTPRQGMTPFRTPQRTPAGKGDSIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRKEIQTPNPTLTPMATSGVPGLTPKSGMTPSRDGYNFGMTPKVTPIRDDQHINEDMDIHDNAKHELRRQADLRRTLRLGLSVLPQPKNEYQIVMQPVPEDNEEPEEKIEEDMSDRIARERAEEEARQQALLRKRSNVLQRELPRPPVASLELIRNSLMRADGDKSSFVPPTSIEQADEMIRKEIVSLLEHDNAKYPLDDKMNKEKRKNVKRSTHGPLDAIPVIE 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7535108 7537638 + Bma009154.1 Bma13g00410 93139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00410 625 CDD SANT_CDC5_II 55 106 - -
Bma13g00410 625 MobiDBLite consensus disorder prediction 157 176 - -
Bma13g00410 625 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Bma13g00410 625 PANTHER - 1 624 - -
Bma13g00410 625 Gene3D - 5 59 - -
Bma13g00410 625 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 400 423 - -
Bma13g00410 625 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 624 - -
Bma13g00410 625 Gene3D - 60 116 - -
Bma13g00410 625 Coils Coil 167 187 - -
Bma13g00410 625 SMART sant 58 105 IPR001005 -
Bma13g00410 625 SMART sant 6 55 IPR001005 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 113 150 - -
Bma13g00410 625 Pfam pre-mRNA splicing factor component 407 611 IPR021786 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 597 625 - -
Bma13g00410 625 SUPERFAMILY Homeodomain-like 33 105 IPR009057 -
Bma13g00410 625 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Bma13g00410 625 MobiDBLite consensus disorder prediction 381 423 - -
Bma13g00410 625 CDD SANT 10 53 IPR001005 -
Bma13g00410 625 Pfam Myb-like DNA-binding domain 10 70 - -
Bma13g00410 625 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00410 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 1082.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00366 Bma-Chr13:6726982 Bma13g00410 Bma-Chr13:7535108 1.22E-06 dispersed
Bma13g00410 Bma-Chr13:7535108 Bma01g02549 Bma-Chr1:83154880 2.60E-08 dispersed
Bma13g00410 Bma-Chr13:7535108 Bma08g00007 Bma-Chr8:171955 2.51E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g605 Blo10g00270 . . . Bpe11g01310 . Bma13g00410 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00782 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g03418 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00410 . 1 625 MYB-Related Transcription Factor Family AT1G09770 81.4 3.6e-280 961.1
Bma13g00366 . 1 226 MYB-Related Transcription Factor Family AT1G09770 93.4 9.9e-113 404.8
Bma08g00007 BCT,CCT 206 682 MYB-Related Transcription Factor Family AT3G18100 55.5 6.3e-150 528.1
Bma08g00007 BCT,CCT 206 682 MYB-Related Transcription Factor Family AT3G18100 55.5 6.3e-150 528.1
Bma13g00410 . 1 625 MYB-Related Transcription Factor Family AT1G09770 81.4 3.6e-280 961.1
Bma13g00366 . 1 226 MYB-Related Transcription Factor Family AT1G09770 93.4 9.9e-113 404.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58211 PF11831 Myb_Cef 2.80E-49 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00410 Bma_Chr13 FPKM 13.583795 17.281515 8.473432 8.889226 19.307432 17.489437 18.095596 12.795742 13.129871 12.934788