Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00423 ATGATGAATCCCATGTCTAAACAGGCTCCTCCATTAGTTTCCGACACTAGGACTGTCGGCCATTTGTTCTCAACGTCCTCAGCTTTTCACAGCAGTGTTCATTTTTCTTCCATTTCATCGCAACCCCGAACGTCGCCCTTCATTTCTCAGTCAGTGAGAGCTGAAACATTGTTGCCACCTACTCATTCATCTCATACAGATTTACAGTCTACGACATTGACTAGTAATGTTGAAGAAAATAGTATCTCTTGGTCTTCCAATCCGCTTCATGGTCTTCTTGATTTTTCAGACAATGTTTCGGTTCAGAACGTCCAGGTGGAAAACACGAATGACGTTGTAACAACAGATGACCATTCTAAGAGAACTGATTGGCCAACTTGGGCTGATCAGTTTATATCTGTTGATGACCTTTTTTCAGATGCTGATGGGCCAGCTCCTGAAGTGGTTAATTCGTCTTCTGAAACTCTTGGTCCACGGCTCCAGACCAGTAATATAGATCATTTGCCACCTTCTAACTCATTATCTTCTGCACCACCAGCTAGACCAAGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTCGAGGCAGTCGATCAGCTTGGTGGCGGCGAAAAGGCCACTCCAAAGGGTGTCTTGAGGCTGATGAACGTTGAAGGGTTGACAATATATCATGTGAAAAGCCACCTGCAGAAATATCGAACTGCCAGAATTAAACCCGAGTCATCCAATGGATCGTCAGAGAAAAAAATTGCTTCTGGTGAAGAAATGAAAAATCTAGACTTGAAGACGAGTTTGGGAATAACTGAAGCATTGCGCCTGCAAATGGAAGTTCAGAAGCAGCTTCATGAACATCTGGAGATTCAAAGACATTTGCAGTTACGAATCGAAGAACAGGGAAGACGACTTCAAGAGATGTTTGAGAAACAAAGGAACATGGATAACACCAAGTTGAAGGCTTCTTCATCTACCTTAGACATACCCTCTTCTCCACGGCCAAATGCAGAGCAATCTTCCTCCGCAAATGACCAGGCGGCCCAAGCAGAAATCGGCCCAAGCAGTAGCAATGCCACCACAACCCAAGAGAATTCTGGGTCTGTAAATGGGAAGAAGAATGGACGGGAAGCTGAAACGAGCGAGAACACCGAGCAACGTGAAGACGAGCCTCGAAAACGAGCAAGAACAGGAGATGAAGAGGCGTTGTGTTGA 1209 45.33 MMNPMSKQAPPLVSDTRTVGHLFSTSSAFHSSVHFSSISSQPRTSPFISQSVRAETLLPPTHSSHTDLQSTTLTSNVEENSISWSSNPLHGLLDFSDNVSVQNVQVENTNDVVTTDDHSKRTDWPTWADQFISVDDLFSDADGPAPEVVNSSSETLGPRLQTSNIDHLPPSNSLSSAPPARPRMRWTPELHEAFVEAVDQLGGGEKATPKGVLRLMNVEGLTIYHVKSHLQKYRTARIKPESSNGSSEKKIASGEEMKNLDLKTSLGITEALRLQMEVQKQLHEHLEIQRHLQLRIEEQGRRLQEMFEKQRNMDNTKLKASSSTLDIPSSPRPNAEQSSSANDQAAQAEIGPSSSNATTTQENSGSVNGKKNGREAETSENTEQREDEPRKRARTGDEEALC 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7767665 7770050 - Bma009173.1 Bma13g00423 93152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00423 402 Gene3D - 180 239 - -
Bma13g00423 402 Pfam MYB-CC type transfactor, LHEQLE motif 268 312 IPR025756 -
Bma13g00423 402 MobiDBLite consensus disorder prediction 146 178 - -
Bma13g00423 402 SUPERFAMILY Homeodomain-like 179 235 IPR009057 -
Bma13g00423 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 182 235 IPR006447 GO:0003677
Bma13g00423 402 MobiDBLite consensus disorder prediction 310 402 - -
Bma13g00423 402 Pfam Myb-like DNA-binding domain 183 234 IPR001005 -
Bma13g00423 402 MobiDBLite consensus disorder prediction 373 402 - -
Bma13g00423 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 395 IPR044848 GO:0003700
Bma13g00423 402 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 1 395 - -
Bma13g00423 402 MobiDBLite consensus disorder prediction 316 372 - -
Bma13g00423 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 238 IPR017930 -
Bma13g00423 402 MobiDBLite consensus disorder prediction 145 183 - -
Bma13g00423 402 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01166 Bma-Chr1:12844871 Bma13g00423 Bma-Chr13:7767665 7.69E-19 dispersed
Bma09g00485 Bma-Chr9:40226115 Bma13g00423 Bma-Chr13:7767665 1.54E-80 dispersed
Bma13g00423 Bma-Chr13:7767665 Bma15g00732 Bma-Chr15:13582960 1.53E-41 dispersed
Bma14g00077 Bma-Chr14:1033789 Bma13g00423 Bma-Chr13:7767665 1.32E-17 dispersed
Bma13g00423 Bma-Chr13:7767665 Bma14g01215 Bma-Chr14:18590862 4.46E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58213 PF00249 Myb_DNA-binding 4.20E-08 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00423 - - mcha:111024994 381.719