Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00423 ATGATGAATCCCATGTCTAAACAGGCTCCTCCATTAGTTTCCGACACTAGGACTGTCGGCCATTTGTTCTCAACGTCCTCAGCTTTTCACAGCAGTGTTCATTTTTCTTCCATTTCATCGCAACCCCGAACGTCGCCCTTCATTTCTCAGTCAGTGAGAGCTGAAACATTGTTGCCACCTACTCATTCATCTCATACAGATTTACAGTCTACGACATTGACTAGTAATGTTGAAGAAAATAGTATCTCTTGGTCTTCCAATCCGCTTCATGGTCTTCTTGATTTTTCAGACAATGTTTCGGTTCAGAACGTCCAGGTGGAAAACACGAATGACGTTGTAACAACAGATGACCATTCTAAGAGAACTGATTGGCCAACTTGGGCTGATCAGTTTATATCTGTTGATGACCTTTTTTCAGATGCTGATGGGCCAGCTCCTGAAGTGGTTAATTCGTCTTCTGAAACTCTTGGTCCACGGCTCCAGACCAGTAATATAGATCATTTGCCACCTTCTAACTCATTATCTTCTGCACCACCAGCTAGACCAAGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTCGAGGCAGTCGATCAGCTTGGTGGCGGCGAAAAGGCCACTCCAAAGGGTGTCTTGAGGCTGATGAACGTTGAAGGGTTGACAATATATCATGTGAAAAGCCACCTGCAGAAATATCGAACTGCCAGAATTAAACCCGAGTCATCCAATGGATCGTCAGAGAAAAAAATTGCTTCTGGTGAAGAAATGAAAAATCTAGACTTGAAGACGAGTTTGGGAATAACTGAAGCATTGCGCCTGCAAATGGAAGTTCAGAAGCAGCTTCATGAACATCTGGAGATTCAAAGACATTTGCAGTTACGAATCGAAGAACAGGGAAGACGACTTCAAGAGATGTTTGAGAAACAAAGGAACATGGATAACACCAAGTTGAAGGCTTCTTCATCTACCTTAGACATACCCTCTTCTCCACGGCCAAATGCAGAGCAATCTTCCTCCGCAAATGACCAGGCGGCCCAAGCAGAAATCGGCCCAAGCAGTAGCAATGCCACCACAACCCAAGAGAATTCTGGGTCTGTAAATGGGAAGAAGAATGGACGGGAAGCTGAAACGAGCGAGAACACCGAGCAACGTGAAGACGAGCCTCGAAAACGAGCAAGAACAGGAGATGAAGAGGCGTTGTGTTGA 1209 45.33 MMNPMSKQAPPLVSDTRTVGHLFSTSSAFHSSVHFSSISSQPRTSPFISQSVRAETLLPPTHSSHTDLQSTTLTSNVEENSISWSSNPLHGLLDFSDNVSVQNVQVENTNDVVTTDDHSKRTDWPTWADQFISVDDLFSDADGPAPEVVNSSSETLGPRLQTSNIDHLPPSNSLSSAPPARPRMRWTPELHEAFVEAVDQLGGGEKATPKGVLRLMNVEGLTIYHVKSHLQKYRTARIKPESSNGSSEKKIASGEEMKNLDLKTSLGITEALRLQMEVQKQLHEHLEIQRHLQLRIEEQGRRLQEMFEKQRNMDNTKLKASSSTLDIPSSPRPNAEQSSSANDQAAQAEIGPSSSNATTTQENSGSVNGKKNGREAETSENTEQREDEPRKRARTGDEEALC 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7767665 7770050 - Bma009173.1 Bma13g00423 93152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00423 402 Gene3D - 180 239 - -
Bma13g00423 402 Pfam MYB-CC type transfactor, LHEQLE motif 268 312 IPR025756 -
Bma13g00423 402 MobiDBLite consensus disorder prediction 146 178 - -
Bma13g00423 402 SUPERFAMILY Homeodomain-like 179 235 IPR009057 -
Bma13g00423 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 182 235 IPR006447 GO:0003677
Bma13g00423 402 MobiDBLite consensus disorder prediction 310 402 - -
Bma13g00423 402 Pfam Myb-like DNA-binding domain 183 234 IPR001005 -
Bma13g00423 402 MobiDBLite consensus disorder prediction 373 402 - -
Bma13g00423 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 395 IPR044848 GO:0003700
Bma13g00423 402 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 1 395 - -
Bma13g00423 402 MobiDBLite consensus disorder prediction 316 372 - -
Bma13g00423 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 238 IPR017930 -
Bma13g00423 402 MobiDBLite consensus disorder prediction 145 183 - -
Bma13g00423 402 MobiDBLite consensus disorder prediction 237 256 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00423 - - - mcha:111024994 381.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01166 Bma-Chr1:12844871 Bma13g00423 Bma-Chr13:7767665 7.69E-19 dispersed
Bma09g00485 Bma-Chr9:40226115 Bma13g00423 Bma-Chr13:7767665 1.54E-80 dispersed
Bma13g00423 Bma-Chr13:7767665 Bma15g00732 Bma-Chr15:13582960 1.53E-41 dispersed
Bma14g00077 Bma-Chr14:1033789 Bma13g00423 Bma-Chr13:7767665 1.32E-17 dispersed
Bma13g00423 Bma-Chr13:7767665 Bma14g01215 Bma-Chr14:18590862 4.46E-131 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g670 Blo10g00280 Blo11g00435 Bda07g01170 . Bpe11g01303 Bpe09g00654 Bma13g00423 . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag0667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma01g00775 . 1 184 G2-like Transcription Factor Family AT5G42630 54.8 1.4e-37 153.3
Bma06g00768 CCT 1 256 G2-like Transcription Factor Family AT1G25550 52.6 1.3e-58 223.4
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT1G25550 56.9 5.0e-53 204.9
Bma14g01699 CCT 19 305 G2-like Transcription Factor Family AT1G68670 51.6 1.2e-64 243.8
Bma14g01699 CCT 19 251 G2-like Transcription Factor Family AT3G25790 54.9 1.5e-43 173.3
Bma06g00768 CCT 19 298 G2-like Transcription Factor Family AT1G13300 51.2 2.0e-59 226.5
Bma14g01699 CCT 19 294 G2-like Transcription Factor Family AT1G13300 50.2 4.9e-58 221.9
Bma07g00088 . 1 269 G2-like Transcription Factor Family AT3G46640 52.4 4.3e-64 241.9
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT5G05090 53.9 9.2e-73 270.4
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT5G05090 51.9 2.5e-70 262.3
Bma14g01215 . 6 147 G2-like Transcription Factor Family AT5G29000 54.4 1.1e-37 154.1
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT4G13640 53.5 6.9e-61 231.1
Bma02g01204 BCT 12 310 G2-like Transcription Factor Family AT4G13640 53.2 1.1e-55 213.8
Bma09g00485 BCT 130 376 G2-like Transcription Factor Family AT3G04450 53.0 4.4e-50 195.7
Bma06g01283 BCT 12 312 G2-like Transcription Factor Family AT3G24120 54.8 1.9e-74 276.2
Bma02g01204 BCT 12 263 G2-like Transcription Factor Family AT3G24120 57.4 6.5e-67 251.1
Bma12g00569 BCT,CCT 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma12g00572 . 20 185 G2-like Transcription Factor Family AT3G24120 58.0 4.7e-41 165.2
Bma11g00043 . 13 146 G2-like Transcription Factor Family AT3G24120 60.4 5.4e-37 151.8
Bma12g00569 BCT,CCT 1 275 G2-like Transcription Factor Family AT1G79430 58.3 3.3e-65 245.7
Bma12g00572 . 1 275 G2-like Transcription Factor Family AT1G79430 57.9 7.3e-65 244.6
Bma08g00825 BCT,CCT 1 189 G2-like Transcription Factor Family AT1G79430 59.1 2.9e-53 206.1
Bma06g01283 BCT 36 200 G2-like Transcription Factor Family AT1G79430 61.4 6.9e-39 158.3
Bma02g01204 BCT 36 202 G2-like Transcription Factor Family AT1G79430 61.5 1.1e-36 151.0
Bma01g02700 . 1 306 G2-like Transcription Factor Family AT3G10760 65.1 2.2e-95 345.9
Bma05g01331 . 1 309 G2-like Transcription Factor Family AT3G10760 64.6 1.9e-91 332.8
Bma01g02700 . 1 208 G2-like Transcription Factor Family AT2G40970 64.0 1.9e-64 242.7
Bma05g01331 . 1 207 G2-like Transcription Factor Family AT2G40970 62.7 1.4e-62 236.5
Bma13g00423 . 91 323 G2-like Transcription Factor Family AT4G28610 51.0 2.0e-50 196.8
Bma14g01215 . 4 225 G2-like Transcription Factor Family AT4G28610 50.4 1.5e-42 170.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005858 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 0 1 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58213 PF00249 Myb_DNA-binding 4.20E-08 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00423 Bma_Chr13 FPKM 10.354547 11.435754 10.931129 11.013438 18.738461 18.218212 18.476532 13.671102 12.202041 12.352051