Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00425 ATGGAGGTTCACTGGCTCATCTTCTACCTTTTCGTTACTGTTTCTCTGGTTTTTGCTGCGGGAAACGATCAATCTGTGATGAACAATGAAGTTTCAGTGTTGTTGTCACTGAAAGCCAGTGTAATCGATCCGTTGGAGAGATTGGAGGATTGGAAAATTCCGAGTGATGCCGCCGGGGAAGGGCGTTCCCTGCACTGCCGGTGGACTGGAGTTTCGTGCAACTCGGAAGGATTTGTGGAAAAGCTCGACCTCTCCAACTTGAATCTTAGTGGAACTGTTTCGGACTCCATTAACGACCTTCCAAGCCTCGCTTTCCTCAACATTTGCTGTAACGGTTTTGATTCATCTCTACCGGCATCTCTTTCGAATCTCACTTCTCTGAAGAGTTTCGACGTGAGTGAGAATAATTTCGTCGGGAAATTCCCCACGGGGCTTGGAAGTGCGTGGGGGCTTACTTCAATCAATGCGTCAAGTAATAATTTCTCCGGGTTTCTTCCTGAAGATATTGGAAATGCTACGAAACTCGAAATTATTGATTTCAGAGGGAGTTTTTTCGAAGGTTCGGTTCCTCTGTCTTTTAAAAATCTGAAGAATTTGAAGTTTCTTGGCCTTTCTGGGAATAATCTTACAGGAAAAATTCCTCAAGAACTCGGTGAACTCTCTTCTCTGGAGACATTGATAATTGGATACAATGAATTTGAAGGAGAAATTCCGTCTGGATTTGGAAATCTCGCTAATCTTCGTTATCTTGATTTGGCTTTTGCCAGTTTTAGTGGTCAAATTCCTCCTGAATTGGGTAAACTCAAAAATCTCACCACAGTCTATTTGTACAAAAACAGATTTTCAGGAAAAATTCCCCCTGAAATCTTTAACATCAGTTCTTTAGTATTTTTAGATCTCTCCGACAATCAGATTTCAGGAGAGATTCCTACGGAGATTGGAAATTTGAAGAATTTGCAGCTTTTGAACTTAATGTGCAATAATTTATCTGGTTCAATTCCAAACACATTGGCAGAGTTAACAAAGCTGGAAGTTCTTGCTCTGTGGAAAAACTCTTTCACTGGTTCTTTGCCAGAAAATCTCGGCCTCCACTCACCATTACAATGGCTAGATGTTTCTTCCAACTCTTTCTCAGGTGAAATTTCATCTGGTCTGTGTTACTCTGGAAATTTGACGAAACTTATCCTCTTCAACAATTCATTGTCTGGTTCGATTCCGAAAAGCCTGTCAATGTGTTCATCTCTAGTTCGTGTTAGATTGCAAAATAATCTATTATCAGGAACAATTCCAGTTGGATTCGGAAATCTTCCGAGTCTTCAACGGCTTGAATTGGCAAGCAACAAGCTCGTAGGACAAATTCCAGAAGATTTTGCTTTATCAACGTCGCTTTCTTTTATTGATGTCTCCTATAACCACCTTGAGTTGACTCTTCCTTCTAGTTTACTTTCCATTCCCAATCTTCAGAATTTGATTGCTTCGAATAACAACTTGAAAGGCAATATCCCGGATGAGTTTCAGGGTTGTCCATCTCTTTCAGTGCTTGATCTTTCAAATAATCAACTTTCTGGAACAATTCCTGAGAGTATCGGTTCTTGCGAAAAGCTTGTCAATCTCAACCTTCGAAACAACAAGTTCACCGGGGAAATTCCAAAAGTTCTAGCAACAATGCCTACTCTAGCCATTCTCGATCTTTCGAACAACTCCCTAATTGGTCGAATACCTGAAAATTTCGGAAGCTCTCCAGCATTAGAGACGCTAAATGTGTCTTACAATAAACTCGAAGGGCCGGTACCTGCAAATGGGATTTTAACGTCCATTAACCCTAATGATCTTGCAGGAAATTCCGGTCTTTGTGGAGGCGTTCTTCCTCCGTGTACTAAAAGCTTTGAATCGATAAACGGACGGCTGAAAAATACGAGAAATGTTAGCGTTGTGATTGGGTTTGTCATTGCAATTTCAGTTCTTCTCGTTCTAGTAATTTCATTCTTTGCAGGGAGATCATTGTACAGAAGGTGGTACTTGTACAACAGCTTCTTATATGATTGGTTCAAGAAGAGCAATGAAGAATGGCCATGGAGATTAGTAGCTTTTCAAAGAGTTAATTTCACATGCTCCGATATTCTAGCTTGCATAAAAGAGACCAATGTGATCGGAATGGGCGGAACTGGTATCGTTTACAAGGCAGAAACTTACGGACTGAACGGAGTAGTTGCAGTGAAAAAGCTATGGGGAACAGAATCAGACATTGAAAGGGGAAATGATCTTCTAGGAGAGGTGAATCTTCTGGGCAGGCTCCGGCATCGAAACATTGTACGGCTGTTAGGCTATCTTCACAATGATCGTGATGTAATGATCTTGTACGAGTATATGTCGAATGGAAATCTGGGAACTGCTCTTCATGGTAAAGGAGCAGGGAAATTGTTGGTTGATTGGGTTTGTAGATATAATATTGCAGTTGGTGTAGCACAAGGATTGAATTATCTTCACCACGATTGTCGTCCTCCGATAATCCATCGAGATATCAAGACGAACAATATATTGCTCGACGAGAATCTGGAGGCGAGGATTGCTGATTTTGGGTTGGCGAGGATGATGATTCATAAGAATGAAACTGTCTCCATGGTAGCAGGATCTTATGGATACATTGCCCCTGAATATGGATACACAATGAAAGTTGACGAGAAGAGTGATGTATACAGCTATGGAGTGGTGCTTCTAGAGCTTCTGACAGGAAAAATGCCATCAGAATCTGAATTTGGTGAGTCTGTAAACATAGTGGAATGGGTTAGAAGAAAACTCAACAAAAGGGACTTGGAAGGGGCACTAGACCCAGAAATTGTAGGAAACTGCAAACACGTTGAAGAAGAAATGCTTCTTGTTCTTAGAATTGCTCTTATCTGCACTGCAAAACTTCCCAAAGATAGACCTTCCATGAGAGATATAGTCACAATGCTTGGAGAAGCAAAGCCAAGAAGAAAGAGCATTTGCAACAATGGAGGAGGAGGAGGAGGCCAAATTGGTGGGAAAGAAAAATCTTCCTTCACCTCCATTTCACCCGTCTCCCGACTTCTCTGA 3075 41.37 MEVHWLIFYLFVTVSLVFAAGNDQSVMNNEVSVLLSLKASVIDPLERLEDWKIPSDAAGEGRSLHCRWTGVSCNSEGFVEKLDLSNLNLSGTVSDSINDLPSLAFLNICCNGFDSSLPASLSNLTSLKSFDVSENNFVGKFPTGLGSAWGLTSINASSNNFSGFLPEDIGNATKLEIIDFRGSFFEGSVPLSFKNLKNLKFLGLSGNNLTGKIPQELGELSSLETLIIGYNEFEGEIPSGFGNLANLRYLDLAFASFSGQIPPELGKLKNLTTVYLYKNRFSGKIPPEIFNISSLVFLDLSDNQISGEIPTEIGNLKNLQLLNLMCNNLSGSIPNTLAELTKLEVLALWKNSFTGSLPENLGLHSPLQWLDVSSNSFSGEISSGLCYSGNLTKLILFNNSLSGSIPKSLSMCSSLVRVRLQNNLLSGTIPVGFGNLPSLQRLELASNKLVGQIPEDFALSTSLSFIDVSYNHLELTLPSSLLSIPNLQNLIASNNNLKGNIPDEFQGCPSLSVLDLSNNQLSGTIPESIGSCEKLVNLNLRNNKFTGEIPKVLATMPTLAILDLSNNSLIGRIPENFGSSPALETLNVSYNKLEGPVPANGILTSINPNDLAGNSGLCGGVLPPCTKSFESINGRLKNTRNVSVVIGFVIAISVLLVLVISFFAGRSLYRRWYLYNSFLYDWFKKSNEEWPWRLVAFQRVNFTCSDILACIKETNVIGMGGTGIVYKAETYGLNGVVAVKKLWGTESDIERGNDLLGEVNLLGRLRHRNIVRLLGYLHNDRDVMILYEYMSNGNLGTALHGKGAGKLLVDWVCRYNIAVGVAQGLNYLHHDCRPPIIHRDIKTNNILLDENLEARIADFGLARMMIHKNETVSMVAGSYGYIAPEYGYTMKVDEKSDVYSYGVVLLELLTGKMPSESEFGESVNIVEWVRRKLNKRDLEGALDPEIVGNCKHVEEEMLLVLRIALICTAKLPKDRPSMRDIVTMLGEAKPRRKSICNNGGGGGGQIGGKEKSSFTSISPVSRLL 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 7788769 7792032 - Bma009175.1 Bma13g00425 93154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00425 1024 SMART serkin_6 711 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00425 1024 ProSiteProfiles Protein kinase domain profile. 711 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00425 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Bma13g00425 1024 ProSiteProfiles Leucine-rich repeat profile. 510 532 IPR001611 GO:0005515
Bma13g00425 1024 Gene3D Ribonuclease Inhibitor 183 288 IPR032675 -
Bma13g00425 1024 SUPERFAMILY L domain-like 67 334 - -
Bma13g00425 1024 MobiDBLite consensus disorder prediction 993 1024 - -
Bma13g00425 1024 SUPERFAMILY RNI-like 257 598 - -
Bma13g00425 1024 SMART LRR_typ_2 484 507 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 556 580 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 508 532 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 340 364 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 124 148 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 292 316 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 244 268 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 196 220 IPR003591 -
Bma13g00425 1024 SMART LRR_typ_2 436 459 IPR003591 -
Bma13g00425 1024 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXL1 7 1002 - -
Bma13g00425 1024 SMART LRR_bac_2 484 504 - -
Bma13g00425 1024 SMART LRR_bac_2 460 480 - -
Bma13g00425 1024 SMART LRR_bac_2 508 528 - -
Bma13g00425 1024 SMART LRR_bac_2 580 600 - -
Bma13g00425 1024 SMART LRR_bac_2 196 220 - -
Bma13g00425 1024 SMART LRR_bac_2 556 576 - -
Bma13g00425 1024 Gene3D Ribonuclease Inhibitor 26 182 IPR032675 -
Bma13g00425 1024 Pfam Protein kinase domain 713 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00425 1024 Gene3D Transferase(Phosphotransferase) domain 1 794 997 - -
Bma13g00425 1024 Pfam Leucine rich repeat N-terminal domain 28 74 IPR013210 -
Bma13g00425 1024 MobiDBLite consensus disorder prediction 1009 1024 - -
Bma13g00425 1024 Gene3D Phosphorylase Kinase; domain 1 711 793 - -
Bma13g00425 1024 Pfam Leucine rich repeat 485 545 IPR001611 GO:0005515
Bma13g00425 1024 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Bma13g00425 1024 PANTHER UNNAMED PRODUCT 7 1002 - -
Bma13g00425 1024 PRINTS Leucine-rich repeat signature 511 524 - -
Bma13g00425 1024 PRINTS Leucine-rich repeat signature 556 569 - -
Bma13g00425 1024 Gene3D Ribonuclease Inhibitor 292 629 IPR032675 -
Bma13g00425 1024 SUPERFAMILY Protein kinase-like (PK-like) 703 985 IPR011009 -
Bma13g00425 1024 ProSitePatterns Protein kinases ATP-binding region signature. 717 741 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02559 Bma-Chr1:83248326 Bma13g00425 Bma-Chr13:7788769 2.10E-08 dispersed
Bma13g00425 Bma-Chr13:7788769 Bma14g01968 Bma-Chr14:42581795 0 dispersed
Bma13g00425 Bma-Chr13:7788769 Bma09g00155 Bma-Chr9:5397708 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66843 PF00069 Pkinase 5.10E-47 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00425 - - mnt:21407217 1491.48