Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00449 ATGGAAAGGAATACGCATGACGGTATTGGGGATGACTTCTTCGAGCAGATTTTGTCAGTGCCTCCTGCTTTTAATGGGGGAGAGTCGGCTGAGTATGGCGGGAGAGAGGTGGGCTCTGTGGCTATGGCGTTACAGTTAGGGTCTGGATTAGGAGGAAGAGGAGATGATTGTGGTGGCTCCGGAGGTGAATTGAGAGGGACCGCCTTGCAAGGGTTGGGTATGCCGGTAGGATTGAACTTTGAACGGAGCTTTTTGAGGCGAGGGAGATTTGGAGAAGAGATGGAAGCTAATAGCCGTAACAATGCGAATACTAATGCTTCTTCTTCTGCTACTTCTGGAATTTCTGAAAGAGATTCCGTGAATATGAATGCTTTATTCCCAGCTTTTGGACATTTACAATCTCAGCCTGTTAGGCCAGTGCCACCTCCTTCCCAACTACACCAGCCCTATAATGGTCAACCAACATCTGGACAAGTTCCTGCTGTATCCCAACTACCTACGATGCGTCCTCGGGTTCGAGCAAGAAGAGGACAAGCAACAGATCCTCACAGCATTGCAGAGAGGTTACGAAGGGAACGCATTGCGGAAAGAATGAAGGCTTTGCAGGAGCTGGTTCCTAGTTGTAACAAGTCGGATAGGGCAGCCATGCTTGATGAAATTGTGGATTATGTCAAGTTTCTAAGGCTTCAAGTCAAGGTTCTGAGCATGAGCAGACTAGGTGGAGCGGGTGTAGGTCATCTCCTTCCGGATGGACCCGGATTGGGTGTAGCTGAGGGAATTGAAGGTGGAACTGATCAACAAGTTTGGGAAAAATGGTCAACGGATGGAACAGAGCAACAAGTATCCAAATTGATGGAAGAAGACGTTGGAGCTGCCATGCAATTTCTTCAATCAAAGGCTCTTTGCATCAGGCCCATATCATTAGCTTCTGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTACTTCCCTTTCTTCTGTTTTCTTTTTTATTGAAGTGTGGTATTTGTAA 1086 42.82 MERNTHDGIGDDFFEQILSVPPAFNGGESAEYGGREVGSVAMALQLGSGLGGRGDDCGGSGGELRGTALQGLGMPVGLNFERSFLRRGRFGEEMEANSRNNANTNASSSATSGISERDSVNMNALFPAFGHLQSQPVRPVPPPSQLHQPYNGQPTSGQVPAVSQLPTMRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKSDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGVGHLLPDGPGLGVAEGIEGGTDQQVWEKWSTDGTEQQVSKLMEEDVGAAMQFLQSKALCIRPISLASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTSLSSVFFFIEVWYL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8475439 8479363 - Bma009209.1 Bma13g00449 93178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00449 361 SMART finulus 184 233 IPR011598 GO:0046983
Bma13g00449 361 MobiDBLite consensus disorder prediction 91 116 - -
Bma13g00449 361 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 318 - -
Bma13g00449 361 Pfam Helix-loop-helix DNA-binding domain 183 227 IPR011598 GO:0046983
Bma13g00449 361 Gene3D - 173 235 IPR036638 GO:0046983
Bma13g00449 361 Coils Coil 308 311 - -
Bma13g00449 361 MobiDBLite consensus disorder prediction 133 161 - -
Bma13g00449 361 MobiDBLite consensus disorder prediction 96 116 - -
Bma13g00449 361 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 318 - -
Bma13g00449 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 237 IPR036638 GO:0046983
Bma13g00449 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00449 Bma-Chr13:8475439 Bma15g00611 Bma-Chr15:7800367 1.89E-71 dispersed
Bma15g00708 Bma-Chr15:12858643 Bma13g00449 Bma-Chr13:8475439 2.60E-19 dispersed
Bma15g00713 Bma-Chr15:12954798 Bma13g00449 Bma-Chr13:8475439 3.16E-19 dispersed
Bma13g00449 Bma-Chr13:8475439 Bma13g00455 Bma-Chr13:8578593 0 proximal
Bma13g00449 Bma-Chr13:8475439 Bma14g01254 Bma-Chr14:20440056 1.86E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58217 PF00010 HLH 2.30E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00449 - - zju:107412218 347.821