Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00455 ATGGAAAGGAATACGCATGACGGTATTGGGGATGATTTCTTCGAGCAGATTTTGGCAGTGCCTCCTGCTTTTAATGGGGGAGAGTCGGCTGAGTATGGCGGGAGAGAGGTGGGCTCTGTGGCTATGGCGTTACAGTTAGGGTCTGGATTAGGAGGAAGAGGAGATGATTGTGGTGGCTCCGGAGGTGAATTGAGAGGGACCGCCTTGCAAGGATTGGGTATGCCGCTAGGATTGAACTTTGAACGGAGCTTTTTGAGGCGAGGGAGATTTGGAGAAGAGATGGAAGCTAATAGCCGTAACAATGCGAATACTAATGCTTCTTCTTCTGCTACTTCTGGAATTTCTGAAAGAGATTCCGTGAATATGAATGCTTTATTCCCAGCTTTTGGACATTTACAATCTCAGCCTGTTAGGCCAGTGCCACCTCCTTCCCAACTCCACCAGCCCTATAATGGTCAACCAACATCTGGACAAGTTCCTGCTGTATCCCAACTACCTACGATGCGTCCTCGGGTTCGAGCAAGAAGAGGACAAGCAACAGATCCTCACAGCATTGCAGAGAGGTTACGAAGGGAACGCATTGCAGAAAGAATGAAGGCTTTGCAGGAGCTGGTTCCTAGTTGTAACAAGTCGGATAGGGCAGCCATGCTTGATGAAATTGTTGATTATGTCAAGTTTCTGAGGCTTCAAGTCAAGGTTCTGAGCATGAGCAGACTAGGTGGAGCGGGTGTAGGTCAGCTCCTTCCGGATGGACCCGGATTGGGTGGAGCTGAGGGAATTGAAGGTGGAACTGATCAACAAGTTTGGGAAAAATGGTCAACGGATGGAACAGAGCAACAAGTATCCAAATTGATGGAAGAAGACGTTGGAGCTGCCATGCAATTTCTTCAATCAAAGGCTCTTTGCATCATGCCCATATCATTAGCTTCTGCAATTTTCAGAACCCACCAATTGGACTCGCAGATGACAGTTAAGCCAGAATCCGATACTCCA 993 47.94 MERNTHDGIGDDFFEQILAVPPAFNGGESAEYGGREVGSVAMALQLGSGLGGRGDDCGGSGGELRGTALQGLGMPLGLNFERSFLRRGRFGEEMEANSRNNANTNASSSATSGISERDSVNMNALFPAFGHLQSQPVRPVPPPSQLHQPYNGQPTSGQVPAVSQLPTMRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKSDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGVGQLLPDGPGLGGAEGIEGGTDQQVWEKWSTDGTEQQVSKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQLDSQMTVKPESDTP 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8578593 8582833 - Bma030590 Bma13g00455 93184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00455 331 SMART finulus 184 233 IPR011598 GO:0046983
Bma13g00455 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 237 IPR036638 GO:0046983
Bma13g00455 331 MobiDBLite consensus disorder prediction 95 115 - -
Bma13g00455 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 320 - -
Bma13g00455 331 Pfam Helix-loop-helix DNA-binding domain 183 227 IPR011598 GO:0046983
Bma13g00455 331 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 320 - -
Bma13g00455 331 MobiDBLite consensus disorder prediction 96 115 - -
Bma13g00455 331 Gene3D - 173 235 IPR036638 GO:0046983
Bma13g00455 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00455 Bma-Chr13:8578593 Bma15g00611 Bma-Chr15:7800367 2.19E-80 dispersed
Bma13g00449 Bma-Chr13:8475439 Bma13g00455 Bma-Chr13:8578593 0 proximal
Bma13g00455 Bma-Chr13:8578593 Bma14g01254 Bma-Chr14:20440056 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58218 PF00010 HLH 2.00E-07 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00455 - - zju:107412218 371.318