Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00456 ATGGCTTTTACTGCGATTAATTTTGCTCGATTTCTTGTTTCTTTGTCGAAGAAAGTTTGGGAAAACAAGAATATTATCGTTCGCTCTCTCTCATATGTGGCCATTGACGTGGAGCTCGATCGGGATCCACAAATTCCGATTGTTTCTGCTGATCGGAAAACCCTAGGCGACATGGTGAGGGAGAAGAGATCTGATGTGTTGAATCAGTTCGGAGGTGTAAATGATTTGGCTGCGATTCTTGAAACTGACGTTATAAAAGGAGTTCCCGGTACTGAGACTGATCTTGCCCTAAGGAAGAGTCTGTTTGGTTCGAATACGTTCGAGAAACCACCCGCCAAAGTTTTTTTGAGATTTGTTCTTGAAGCGTTGAGCGATCCGACGATCATTATTCTCTTAATCTGCGCAACTTTTGCTCTCGGCTTCGGAATCAAACAGCACGGTTGGGGCGATGGATGGTTTGACGGCGGGAGTATCATGTTCGCCGTCTTTCTCGTTGTCATAATCTCTTCCATAAGTAACTACAACCAATCTCGACAGTTCGTGAAGCTTTCGGCCAAGAGCGGCGACATAAAGGTTGAAGTGGTGAGAGGAGGACGGAGGCAATTCATCTCCATCTTCGACGTTGTGGTGGGCGATCTCGTGTGTTTGAGCATCGGAGGTCAAGTACCTGCAGATGGATTGTGCTTGGAAGGAACTCCGTTAATGGTGGACGAGTCGAGCATGACAGGGGAGAGTGATCATGTGGAGGTCAATCACATCAATAATCCTTTCTTGCTATCTGGGACAAAGGTAATGGATGGCTATGGCATGATGCTAGTCACTTCTGTCGGGATGAACACAGCCTGGGGCGAGATGATGAGCACGGTAAGCCGTGAAGTGAATGAGGAAACTCCCTTGCAAGTGCGTCTCAACAAAATGACATCTTACATAGGAAAAATTGGCCTCACTGTCGCCGTATTTGTTCTAATTGTTCTATCTATCCGTTATTTTACTGGGCACACCAGAGATGAGAAGGGAAATCAGGAATTTAACGGAAAAAAGACGAAATTCGACGATGTGATGAATGCTGTAATCAGAATCATCTCTGCAGCCGTGACGATTGTTGTTGTGGCTATCCCAGAAGGTTTGCCTCTGGCTGTTACTTTGACTCTTGCATATTCAATGAAGAAGATGATGAGAGACAATGCCATGGTGAGAAACTTATCTGCATGTGAGACAATGGGGTCAGCCACGACAATATGCACAGACAAAACTGGCACGCTTACTCTTAACGAGATGAAAGTTACAGAGTTTTGGCTCGGAAAAAAAGAGATGAAGGAGGATACCTCGAATATAGTGTTGGGTGAAATGCTGATTAATTATCCAATTAATTACCCTTCCCTGAAGAATCCAAAATTTCTGAAATCAAACAACTCTTATCCAAATCTAGTAGGATTGAAGGAGCAGGATATGGACATTGATGAACTGAAGAAATGTAATGAAATTATCCACGTGGAGACCTTCAATTCAGAGAAAAAAAGAAGTGGAATTTTGATTAGGAACAACGAGAAGAAGACTCAGACTCACTGGAAAGGAGCTGCTGAGATGATATTAGCAATGTGTTCGCATTATTATGATACGGCGGGGACAGTAACAGCCATCGACGACGAGGAAAGAAGACAGCTTGATACAATCATATCGAACATGGCAGGGAAAAGCTTACGATGCATAGCCTTTGCTTGCAAAAAAGCTGAAGAAGAAAATGGGAATGTTCACCTCGACGAATCCGGTTTGATTTTACTAGGAATTGCGGGTTTGAAAGATCCATGTCGAGAAGGAGTTAAAACAGCCATTGAAACTTGCAAAGCTGCAGGCGTGAATATCAAAATGATCACAGGTGATAATGTGCATACAGCCAGGGCAATAGCCATTGAATGTGGTATACTCAATATCAATGAAAGTCAAGACATTGATGCTGTGATAGAAGGATCTCAATTTAGAAATTACTCACCAGAAGAGAGAATGGAGAAGATTGACAAAATCAAAGTAATGGCTCGATCCTCCCCGTCCGACAAGCTGCAGATGGTGCAGAGCTTGAAGGAGAAAGGCCACGTCGTAGCAGTCATGGGCAACGGAACAAACGACGCTCTGGCCTTAAAAGAGGCCGATATTGGACTTTCTATGGGAATTCAAGGCACTGAAGTGGCAAAAGAGAGCTCCGATATAGTAATTATGGACGACAATTTCACATCTGTGATGACAGTTTTGAGGTGGGGAAGATGTGTTTATAACAACATTCGGAAATTCATCCAATTCCAGCTCACCGTCAATGTCGCCACCCTCGCAATCAACTTCGTCGCAGCTTTATCTTCCAGAGAAGTCCCTCTAACATCATTTCAGCTCCTGTGGGTGAATCTCATAATGGACACTCTAGGAGCTTTAGCTCTGGCCACCGAACAACCAAGTGACGATCTCATGGAAACCCCGCCGGTCGGACGAACCGAGTCGTTGATCACCCGAGTCATGTGGAGAAACCTCATTGCTCAGGCCCTTTACCAAGTAACCGTCTTCCTAGTCTTAGAATTCAAGGGAAGATCCATCTTCAACGTGAACGAATCTGTCAAGAACACACTCATTTTCAACACCTTCGTCCTCTGCCAAATCTTTAACGAGTTCAACGCGAGGAAGCTGGAGAAGAAGAACATATTCAAAGGGCTACATAAAAATAAGCTCTTTTTAGCCATTGTTGGAATCACCATTGTTCTTCAACTGGTAATGGTTGAGTTCTTGAAGAAGTTTGCTAACACAGAGAGGCTGAATTGGGGCCAGTGGGGTGCTTGCACCGGCATCGCCGCATTATCTTGGCCGATCGGGTGGTTGGTCAAATGCATAACCATTTCAGGCATGTAG 2889 44.38 MAFTAINFARFLVSLSKKVWENKNIIVRSLSYVAIDVELDRDPQIPIVSADRKTLGDMVREKRSDVLNQFGGVNDLAAILETDVIKGVPGTETDLALRKSLFGSNTFEKPPAKVFLRFVLEALSDPTIIILLICATFALGFGIKQHGWGDGWFDGGSIMFAVFLVVIISSISNYNQSRQFVKLSAKSGDIKVEVVRGGRRQFISIFDVVVGDLVCLSIGGQVPADGLCLEGTPLMVDESSMTGESDHVEVNHINNPFLLSGTKVMDGYGMMLVTSVGMNTAWGEMMSTVSREVNEETPLQVRLNKMTSYIGKIGLTVAVFVLIVLSIRYFTGHTRDEKGNQEFNGKKTKFDDVMNAVIRIISAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRNLSACETMGSATTICTDKTGTLTLNEMKVTEFWLGKKEMKEDTSNIVLGEMLINYPINYPSLKNPKFLKSNNSYPNLVGLKEQDMDIDELKKCNEIIHVETFNSEKKRSGILIRNNEKKTQTHWKGAAEMILAMCSHYYDTAGTVTAIDDEERRQLDTIISNMAGKSLRCIAFACKKAEEENGNVHLDESGLILLGIAGLKDPCREGVKTAIETCKAAGVNIKMITGDNVHTARAIAIECGILNINESQDIDAVIEGSQFRNYSPEERMEKIDKIKVMARSSPSDKLQMVQSLKEKGHVVAVMGNGTNDALALKEADIGLSMGIQGTEVAKESSDIVIMDDNFTSVMTVLRWGRCVYNNIRKFIQFQLTVNVATLAINFVAALSSREVPLTSFQLLWVNLIMDTLGALALATEQPSDDLMETPPVGRTESLITRVMWRNLIAQALYQVTVFLVLEFKGRSIFNVNESVKNTLIFNTFVLCQIFNEFNARKLEKKNIFKGLHKNKLFLAIVGITIVLQLVMVEFLKKFANTERLNWGQWGACTGIAALSWPIGWLVKCITISGM 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 8604370 8612765 + Bma009217.1 Bma13g00456 93185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00456 962 Gene3D - 121 410 - -
Bma13g00456 962 ProSitePatterns E1-E2 ATPases phosphorylation site. 416 422 IPR018303 -
Bma13g00456 962 Gene3D - 603 747 IPR023214 -
Bma13g00456 962 Gene3D - 411 423 IPR023214 -
Bma13g00456 962 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Bma13g00456 962 PRINTS P-type cation-transporting ATPase superfamily signature 595 606 - -
Bma13g00456 962 PRINTS P-type cation-transporting ATPase superfamily signature 414 428 - -
Bma13g00456 962 PRINTS P-type cation-transporting ATPase superfamily signature 702 721 - -
Bma13g00456 962 PRINTS P-type cation-transporting ATPase superfamily signature 617 627 - -
Bma13g00456 962 PRINTS P-type cation-transporting ATPase superfamily signature 726 738 - -
Bma13g00456 962 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 357 443 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g00456 962 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 673 782 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g00456 962 PANTHER CATION TRANSPORTING ATPASE 1 445 - -
Bma13g00456 962 PANTHER CATION TRANSPORTING ATPASE 482 950 - -
Bma13g00456 962 SUPERFAMILY HAD-like 412 807 IPR036412 -
Bma13g00456 962 Pfam Cation transporter/ATPase, N-terminus 72 137 IPR004014 -
Bma13g00456 962 Pfam E1-E2 ATPase 190 393 - -
Bma13g00456 962 Pfam haloacid dehalogenase-like hydrolase 411 716 - -
Bma13g00456 962 PANTHER CALCIUM-TRANSPORTING ATPASE 1 445 - -
Bma13g00456 962 PANTHER CALCIUM-TRANSPORTING ATPASE 482 950 - -
Bma13g00456 962 Gene3D - 94 290 - -
Bma13g00456 962 Gene3D - 487 602 IPR023299 GO:0000166
Bma13g00456 962 Gene3D - 424 440 IPR023299 GO:0000166
Bma13g00456 962 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 63 959 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Bma13g00456 962 PRINTS H+-transporting ATPase (proton pump) signature 702 718 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g00456 962 PRINTS H+-transporting ATPase (proton pump) signature 555 573 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g00456 962 PRINTS H+-transporting ATPase (proton pump) signature 734 759 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma13g00456 962 SUPERFAMILY Calcium ATPase, transduction domain A 191 289 IPR008250 -
Bma13g00456 962 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 420 607 IPR023299 GO:0000166
Bma13g00456 962 SUPERFAMILY Calcium ATPase, transmembrane domain M 71 958 IPR023298 -
Bma13g00456 962 Gene3D - 748 956 - -
Bma13g00456 962 Pfam Cation transporting ATPase, C-terminus 787 956 IPR006068 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00456 Bma-Chr13:8604370 Bma15g00618 Bma-Chr15:7843658 0 dispersed
Bma13g00451 Bma-Chr13:8513273 Bma13g00456 Bma-Chr13:8604370 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00456 K01537 - qsu:111992620 1316.21