Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00490 ATGAATTTCACGATCAAGGAAAGACAGATCGTTCCTACGAGAAGCTCTTCTTCAAGCTTGATCTCTACTTCCCGGCATGGAATCGGTACTTTCCTCATTTTTCTCCTTCTCCTTGTTTTTGCTTCGTCGGCCAACGCGCAGACTGATACGAATCCGAGGAACGATCAGTATCAGGGATTTAGCCCGTCTATGGCGGTGATAGTCGTGGTACTTGTTGCCTCGCTTTTCTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCAATCCGCAATCCGCCGGCGGAAGCGTCAGAAACCTTGCGGGAGCAGTCACCGGGAGATCGAGACGCGCCGCTCGCGGCCTCGATGCGAGTGTGATCGGCACGTTTCCGACTTTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAATGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTCGAAGAGGACGAAACGCTGCGTTTGATCCCCAAGTGTGACCATGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTGGTCCCTCAACCCGACGACCCGGCAGGTCAACCCACTGAGTCCACCGCCGAGTTAGATATTGAGTCCCAAACCCAGGCCGTCGAAGAACAACAGCCAGGTTCGTCTTCTCAAGCGATTGCGCCTCAACCTCCGGCGACGAAAGTTTTGAATAGAAACCGTACACGTGGCTCCAGGTCGAGCGGATTACGGTGGTTCTATTCACGTTCTCATTCGACGGGTCATTCTCTAGTCCAACCAGGCGAAAACACGGAGAGATACACGTTGAGATTGCCGGTGGAGGTAAGAAAGCAAATAATGAACCGGCAATTGAACCGGGCGTCAAGCCTGGTGTTGTTGCCGAGTGAAATCAGTTCACGGGCAGGGTACAGATTGAGTGGCGGTGAAGGGAGCGGTCGAGGGAAGTCCTCCCGTCGTCTCGATCGGACGGCAACAGCAAAGTCCGATAGGTGGGTGTTTTCGATGACTCCGCCGTTTTTAACGAGGATGTCATCCATGAAAACGGCGAAGGTGATGACGGCTGATGGCGAGGGAACGTCGACGCAAGAATCAAAACTTGGAGTGTAG 1131 54.02 MNFTIKERQIVPTRSSSSSLISTSRHGIGTFLIFLLLLVFASSANAQTDTNPRNDQYQGFSPSMAVIVVVLVASLFFMAFFSVYIRQCSNPQSAGGSVRNLAGAVTGRSRRAARGLDASVIGTFPTFAYSEVKELKKGNGALECAVCLNEFEEDETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDPAGQPTESTAELDIESQTQAVEEQQPGSSSQAIAPQPPATKVLNRNRTRGSRSSGLRWFYSRSHSTGHSLVQPGENTERYTLRLPVEVRKQIMNRQLNRASSLVLLPSEISSRAGYRLSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFLTRMSSMKTAKVMTADGEGTSTQESKLGV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9186924 9188054 + Bma009261.1 Bma13g00490 93219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00490 376 MobiDBLite consensus disorder prediction 211 253 - -
Bma13g00490 376 SMART ring_2 144 185 IPR001841 -
Bma13g00490 376 CDD RING-H2_EL5_like 143 186 - -
Bma13g00490 376 PANTHER RING FINGER DOMAIN-CONTAINING 31 306 - -
Bma13g00490 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 31 306 - -
Bma13g00490 376 Pfam Ring finger domain 143 186 IPR001841 -
Bma13g00490 376 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Bma13g00490 376 SUPERFAMILY RING/U-box 122 194 - -
Bma13g00490 376 MobiDBLite consensus disorder prediction 311 331 - -
Bma13g00490 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma13g00490 Bma14g01349 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00126 Bma-Chr2:1179072 Bma13g00490 Bma-Chr13:9186924 3.67E-65 dispersed
Bma05g01070 Bma-Chr5:49436002 Bma13g00490 Bma-Chr13:9186924 2.45E-31 dispersed
Bma07g00927 Bma-Chr7:33649379 Bma13g00490 Bma-Chr13:9186924 2.34E-37 dispersed
Bma11g00594 Bma-Chr11:8936163 Bma13g00490 Bma-Chr13:9186924 2.30E-21 dispersed
Bma13g00490 Bma-Chr13:9186924 Bma14g01349 Bma-Chr14:25030743 3.82E-145 dispersed
Bma14g00433 Bma-Chr14:5053904 Bma13g00490 Bma-Chr13:9186924 4.98E-23 dispersed
Bma14g00551 Bma-Chr14:5962704 Bma13g00490 Bma-Chr13:9186924 9.30E-23 dispersed
Bma02g00185 Bma-Chr2:1721985 Bma13g00490 Bma-Chr13:9186924 8.08E-11 transposed
Bma07g00510 Bma-Chr7:6350088 Bma13g00490 Bma-Chr13:9186924 1.50E-26 transposed
Bma03g00048 Bma-Chr3:446085 Bma13g00490 Bma-Chr13:9186924 2.21E-17 transposed
Bma11g00749 Bma-Chr11:18505436 Bma13g00490 Bma-Chr13:9186924 1.67E-25 transposed
Bma13g00255 Bma-Chr13:4018789 Bma13g00490 Bma-Chr13:9186924 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00490 K10664 - tcc:18600420 372.474