Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00490 ATGAATTTCACGATCAAGGAAAGACAGATCGTTCCTACGAGAAGCTCTTCTTCAAGCTTGATCTCTACTTCCCGGCATGGAATCGGTACTTTCCTCATTTTTCTCCTTCTCCTTGTTTTTGCTTCGTCGGCCAACGCGCAGACTGATACGAATCCGAGGAACGATCAGTATCAGGGATTTAGCCCGTCTATGGCGGTGATAGTCGTGGTACTTGTTGCCTCGCTTTTCTTCATGGCTTTCTTCTCCGTCTACATCCGGCAATGCTCCAATCCGCAATCCGCCGGCGGAAGCGTCAGAAACCTTGCGGGAGCAGTCACCGGGAGATCGAGACGCGCCGCTCGCGGCCTCGATGCGAGTGTGATCGGCACGTTTCCGACTTTCGCCTACTCTGAGGTGAAGGAGCTGAAGAAGGGGAATGGGGCGCTAGAATGCGCCGTGTGTTTAAACGAGTTCGAAGAGGACGAAACGCTGCGTTTGATCCCCAAGTGTGACCATGTCTTCCACCCTGACTGCATCGACGCCTGGTTAGGGAACCACACCACCTGTCCGGTTTGCCGAGCCAACCTGGTCCCTCAACCCGACGACCCGGCAGGTCAACCCACTGAGTCCACCGCCGAGTTAGATATTGAGTCCCAAACCCAGGCCGTCGAAGAACAACAGCCAGGTTCGTCTTCTCAAGCGATTGCGCCTCAACCTCCGGCGACGAAAGTTTTGAATAGAAACCGTACACGTGGCTCCAGGTCGAGCGGATTACGGTGGTTCTATTCACGTTCTCATTCGACGGGTCATTCTCTAGTCCAACCAGGCGAAAACACGGAGAGATACACGTTGAGATTGCCGGTGGAGGTAAGAAAGCAAATAATGAACCGGCAATTGAACCGGGCGTCAAGCCTGGTGTTGTTGCCGAGTGAAATCAGTTCACGGGCAGGGTACAGATTGAGTGGCGGTGAAGGGAGCGGTCGAGGGAAGTCCTCCCGTCGTCTCGATCGGACGGCAACAGCAAAGTCCGATAGGTGGGTGTTTTCGATGACTCCGCCGTTTTTAACGAGGATGTCATCCATGAAAACGGCGAAGGTGATGACGGCTGATGGCGAGGGAACGTCGACGCAAGAATCAAAACTTGGAGTGTAG 1131 54.02 MNFTIKERQIVPTRSSSSSLISTSRHGIGTFLIFLLLLVFASSANAQTDTNPRNDQYQGFSPSMAVIVVVLVASLFFMAFFSVYIRQCSNPQSAGGSVRNLAGAVTGRSRRAARGLDASVIGTFPTFAYSEVKELKKGNGALECAVCLNEFEEDETLRLIPKCDHVFHPDCIDAWLGNHTTCPVCRANLVPQPDDPAGQPTESTAELDIESQTQAVEEQQPGSSSQAIAPQPPATKVLNRNRTRGSRSSGLRWFYSRSHSTGHSLVQPGENTERYTLRLPVEVRKQIMNRQLNRASSLVLLPSEISSRAGYRLSGGEGSGRGKSSRRLDRTATAKSDRWVFSMTPPFLTRMSSMKTAKVMTADGEGTSTQESKLGV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9186924 9188054 + Bma009261.1 Bma13g00490 93219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00490 376 MobiDBLite consensus disorder prediction 211 253 - -
Bma13g00490 376 SMART ring_2 144 185 IPR001841 -
Bma13g00490 376 CDD RING-H2_EL5_like 143 186 - -
Bma13g00490 376 PANTHER RING FINGER DOMAIN-CONTAINING 31 306 - -
Bma13g00490 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 31 306 - -
Bma13g00490 376 Pfam Ring finger domain 143 186 IPR001841 -
Bma13g00490 376 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Bma13g00490 376 SUPERFAMILY RING/U-box 122 194 - -
Bma13g00490 376 MobiDBLite consensus disorder prediction 311 331 - -
Bma13g00490 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 191 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00490 K10664 ATL6S; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55 [EC:2.3.2.27] - tcc:18600420 372.474
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma13g00490 Bma14g01349 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00126 Bma-Chr2:1179072 Bma13g00490 Bma-Chr13:9186924 3.67E-65 dispersed
Bma05g01070 Bma-Chr5:49436002 Bma13g00490 Bma-Chr13:9186924 2.45E-31 dispersed
Bma07g00927 Bma-Chr7:33649379 Bma13g00490 Bma-Chr13:9186924 2.34E-37 dispersed
Bma11g00594 Bma-Chr11:8936163 Bma13g00490 Bma-Chr13:9186924 2.30E-21 dispersed
Bma13g00490 Bma-Chr13:9186924 Bma14g01349 Bma-Chr14:25030743 3.82E-145 dispersed
Bma14g00433 Bma-Chr14:5053904 Bma13g00490 Bma-Chr13:9186924 4.98E-23 dispersed
Bma14g00551 Bma-Chr14:5962704 Bma13g00490 Bma-Chr13:9186924 9.30E-23 dispersed
Bma02g00185 Bma-Chr2:1721985 Bma13g00490 Bma-Chr13:9186924 8.08E-11 transposed
Bma07g00510 Bma-Chr7:6350088 Bma13g00490 Bma-Chr13:9186924 1.50E-26 transposed
Bma03g00048 Bma-Chr3:446085 Bma13g00490 Bma-Chr13:9186924 2.21E-17 transposed
Bma11g00749 Bma-Chr11:18505436 Bma13g00490 Bma-Chr13:9186924 1.67E-25 transposed
Bma13g00255 Bma-Chr13:4018789 Bma13g00490 Bma-Chr13:9186924 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g237 . . . . Bpe11g01365 . Bma13g00490 Bma14g01349 . . Cma05g01152 . Car05g01085 . . . Cpe11g00946 . . . . . . . . . . . . . . . Cone9ag1459 . . . . . Cme05g01679 . . . . . . . . . Cmo05g01163 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00490 BCT 32 350 Rapid Response to Elicitors AT3G05200 50.2 9.9e-71 264.2
Bma13g00255 . 32 350 Rapid Response to Elicitors AT3G05200 50.2 1.3e-70 263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007000 1 1 2 3 2 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00490 Bma_Chr13 FPKM 75.447136 80.864677 99.335663 94.833496 81.909874 88.652832 86.527008 127.257843 123.71962 127.069031