Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00506 ATGAAGACCACAGGGATTGCTGGGGTCATTGCTGGTCTGAATGTCATGTGTGTCATCAATGAACCAACTGCCGCTGCCATTGCGTATGGACTGGATAAGGAGGCTGGAAGTACTGGAGAGAAAAATGTTCTGATTTTTGACCCTGGTGGTGGTACCTTTGATGTCTCTCTCCTGACTATCGAGGAGGGAATTTTTGAGGTTAAAGCCACCACCGGAGACACCCACGTTGGTGGTGAAGATTATGATAACAGAATGGTGAACCACTTCGTTCAGGAATTCAAGAGGAAGAACAAGAAAGACATCAGTGGCAATTCTCGGGCTCTTAGGAGACTGAGGACCTCGTGTGAGAGGGCAAAAAGAACTCTCTCATCCACTGCTCAGACCACCATAGAAATGGATTCCTTGTATGAAGGCATTGATTTTTACTCGACCATCACGAGAGCTAGATTTGAGGAGATGAACATGGATCTCTTCAGAAAGTGTATGGAACCAGTAGAAAAGTGTCTGCGAGATGCTAAGATGGACAAGAGCTCCGTCCACGACGTGGTACTGGTTGGTGGGTCTACCAGAATACCTAAGGTCCAGCAGCTCTTGCAGGATTTCTTCAATGGCAAAGAGCTTTGCAAGAGCATTAACCCTGATGAGGCTGTTGCCTACGGGGCTGTTGTTCAGGCTGCTATCTTGAGTGGAGAGGGCAATGAAAAGGTACAAGATCTCTTGCTTTTGGATGTCACTCCTCTCTCACTTGGATTGGAAACCGCTGGTGGTGTCATGACTGTATTGATACCCAGAAGCACTACAATTCTCACAAAGAAGGAGCAGGTCTTCTCTACCTACTCCGACAACCAGCCCGGAGTTTTGATCCAGGTGTATGAAGGTGAAAGAACAAGAACCCGTGATAATAACTTGCTCGGAAAGTTTGAACTCTGTGGCATTCCTCCGACTCCCAGAGGAGTTCCCCAGATCACTGTTTTTTTCGACAAGGGCAGGATCTCAACGAGGAGAGCTGGACTTGATCGCCTCTCACTAGTTACCCAAATGACAAAACATTTTCGTGTTAGAGCCTCTGGAGGAAGAAGTTCAGTGAATGAACTTGAGCAATTCTCTCCAATCTTTGTTTGGCTTCTGCGGGACTTTTATTTAGATTTAGCTGAGGATAATAGAAAGATTACACAACAGAGAGTGGAAGAAACTTTTATGGATACGGCTGTTCCGTCGTGGAAGAACCAGATTACGTTTAGAGCTTTGTTCACTAGCTTTGTTTTGAGCATCATCTTCAACTTCATTGTCTACAAGCCTAACTCGACGACTGGTATTATTCTTTCCCTCAAATGTTGCCGCCGATTTGCTAGGTTTCGTCGTTGTAAGAGGCTACACCGCCTTGATTGA 1389 45.86 MKTTGIAGVIAGLNVMCVINEPTAAAIAYGLDKEAGSTGEKNVLIFDPGGGTFDVSLLTIEEGIFEVKATTGDTHVGGEDYDNRMVNHFVQEFKRKNKKDISGNSRALRRLRTSCERAKRTLSSTAQTTIEMDSLYEGIDFYSTITRARFEEMNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAVVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRSTTILTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELCGIPPTPRGVPQITVFFDKGRISTRRAGLDRLSLVTQMTKHFRVRASGGRSSVNELEQFSPIFVWLLRDFYLDLAEDNRKITQQRVEETFMDTAVPSWKNQITFRALFTSFVLSIIFNFIVYKPNSTTGIILSLKCCRRFARFRRCKRLHRLD 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9709869 9711257 + Bma009289.3 Bma13g00506 93235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00506 462 Pfam Guanylate-binding protein, N-terminal domain 336 399 IPR015894 GO:0003924|GO:0005525
Bma13g00506 462 Gene3D - 34 208 - -
Bma13g00506 462 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 234 327 IPR029047 -
Bma13g00506 462 PANTHER HEAT SHOCK PROTEIN 70KDA 3 328 IPR013126 GO:0005524|GO:0140662
Bma13g00506 462 Pfam Hsp70 protein 6 327 IPR013126 GO:0005524|GO:0140662
Bma13g00506 462 ProSitePatterns Heat shock hsp70 proteins family signature 3. 182 196 IPR018181 -
Bma13g00506 462 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 226 325 IPR029047 -
Bma13g00506 462 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 3 328 - -
Bma13g00506 462 SUPERFAMILY Actin-like ATPase domain 6 33 IPR043129 -
Bma13g00506 462 Gene3D - 6 225 - -
Bma13g00506 462 SUPERFAMILY Actin-like ATPase domain 38 230 IPR043129 -
Bma13g00506 462 Gene3D - 326 423 IPR027417 -
Bma13g00506 462 Gene3D Actin; Chain A, domain 4 77 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00293 Bma-Chr10:2671676 Bma13g00506 Bma-Chr13:9709869 0 dispersed
Bma11g00424 Bma-Chr11:4576448 Bma13g00506 Bma-Chr13:9709869 1.12E-26 dispersed
Bma13g00506 Bma-Chr13:9709869 Bma13g00698 Bma-Chr13:19664215 0 dispersed
Bma13g00506 Bma-Chr13:9709869 Bma01g01879 Bma-Chr1:69104163 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00506 K03283 - mus:103999665 593.964