Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00510 ATGGATAACCCGCTTCCCAAAACCCCCGATTCCTCTGATTTTCGCTCTTTTAACACCCTTAGCGTTAGCCTCTGCAGCACCATTGTTTCGGGCTCGGATTACTCTGCCCCAAGTGCGAGTTTCAGCAGCAACATGAGCAACCTCACTGTTGAATCTCCGACAAACGATAAAGCCGTTTCAGATTGTGAAGAAGGCGAATCCAATTCTTTTGACGATAACAAATTCAATTCTAGGAGCTCTTATCCGTCCAAGCCCCACAGAGGCAACGATATTCGATGGGAGGCGATTCGACGGACGAAAGCAAAAGATGGAGATTTAAACTTCGGCCATTTCAGGCTTTTGAAGAAGCTTGGATTTGGAGACATTGGAAGTGTGTATCTGGCAGAACTGAGAGGAATACGCAGCCTTTTTGCCATGAAGGTTATGGATAAAAGAATGCTGATTGAGAGGAGGAAGATGGGTAGAGCACAAACGGAGAGAGACATACTGGGTTTGCTAGATCATCCTTTTCTACCAACCCTTTACTCCCATTTCGAAACCGACAAATTTTCTTGCTTGTTAATGGAGTTTTGCAGTGGTGGGGATCTTCACACGCTCAGGCAACGCCAGCCTTCCAAGCATTTTTCAGAGCAAGCGGCCAGGTTTTACGCCTCGGAAGTTCTTCTTGCTCTGGAGTATCTTCACATGATGGGAGTTGTTTACAGAGACTTGAAACCAGAAAATGTGTTAGTCAGAGAAGATGGTCACATCATGCTTTCAGATTTTGATTTATCATTGCAATGCTACGTTAATCCAACTCTCGTTCAATCCAATCCAACCTCCGCTTGCGCAATTTCTGCAGCCTGCAAATTACCCATTTGCGTCCACTCATCTTCCTGCCTGCAACCTTCTTGCTTGAAGCCTATCACATTTCTCAAATCAAACAAGATAAAACGTGATCATAAAATGATCAGCTTTTCACATTCAGATTCGCTCCCCCAACTCATAGCCGAGCCTACTTCAGCTAGATCGACGTCTTTTGTCGGAACCCATGAGTACTTGGCTCCGGAGATTATCCGAGGAGACGGCCATGGCAGCGCAGTAGATTGGTGGACATTTGGGATCTTCTTGTACGAATTATTACATGGCAAAACGCCATTCAAAGGGAATGGAAATAGAGAAACCTTGTTCAACGTGATTGGACAGTCGCTCAAATTTCCAGAAGGGAACAGTATTAGCTATGCTGCTAAAGATTTGATCAGAACTTTGCTGGAGAAGGACCCGAAAAAGCGGCTGGGATTCAAAAGGGGCGCGGCGGAGATAAAACAGCATCCATTTTTTCACGGCGTGAACTGGGCTCTCATTCGCAGTTCTTCCCCTCCTGAAATTCTGAGACCAGTTCATCTTCCATTGTTGAACCTCAAGCTGAAATCTCCTTCCCCTCTTCCGTCCAACGACAGCAAGGGAGCATCTGATTCAGACAGCTCCTCCTCGGGTTCTTACTTAGAATTTGAGTTTTTCTAG 1503 45.64 MDNPLPKTPDSSDFRSFNTLSVSLCSTIVSGSDYSAPSASFSSNMSNLTVESPTNDKAVSDCEEGESNSFDDNKFNSRSSYPSKPHRGNDIRWEAIRRTKAKDGDLNFGHFRLLKKLGFGDIGSVYLAELRGIRSLFAMKVMDKRMLIERRKMGRAQTERDILGLLDHPFLPTLYSHFETDKFSCLLMEFCSGGDLHTLRQRQPSKHFSEQAARFYASEVLLALEYLHMMGVVYRDLKPENVLVREDGHIMLSDFDLSLQCYVNPTLVQSNPTSACAISAACKLPICVHSSSCLQPSCLKPITFLKSNKIKRDHKMISFSHSDSLPQLIAEPTSARSTSFVGTHEYLAPEIIRGDGHGSAVDWWTFGIFLYELLHGKTPFKGNGNRETLFNVIGQSLKFPEGNSISYAAKDLIRTLLEKDPKKRLGFKRGAAEIKQHPFFHGVNWALIRSSSPPEILRPVHLPLLNLKLKSPSPLPSNDSKGASDSDSSSSGSYLEFEFF 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 9806958 9808549 + Bma009294.1 Bma13g00510 93239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00510 500 Gene3D Transferase(Phosphotransferase) domain 1 334 456 - -
Bma13g00510 500 MobiDBLite consensus disorder prediction 471 500 - -
Bma13g00510 500 Pfam Protein kinase domain 112 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00510 500 Pfam Protein kinase domain 330 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00510 500 PANTHER PROTEIN KINASE 18 500 - -
Bma13g00510 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Bma13g00510 500 Gene3D Phosphorylase Kinase; domain 1 110 190 - -
Bma13g00510 500 CDD STKc_phototropin_like 110 459 - -
Bma13g00510 500 SMART serkin_6 111 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00510 500 PANTHER FLIPPASE KINASE 1-RELATED 18 500 - -
Bma13g00510 500 MobiDBLite consensus disorder prediction 470 500 - -
Bma13g00510 500 SUPERFAMILY Protein kinase-like (PK-like) 83 469 IPR011009 -
Bma13g00510 500 MobiDBLite consensus disorder prediction 34 88 - -
Bma13g00510 500 Gene3D Transferase(Phosphotransferase) domain 1 191 260 - -
Bma13g00510 500 MobiDBLite consensus disorder prediction 34 56 - -
Bma13g00510 500 MobiDBLite consensus disorder prediction 57 71 - -
Bma13g00510 500 ProSiteProfiles Protein kinase domain profile. 111 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00424 Bma-Chr1:3538782 Bma13g00510 Bma-Chr13:9806958 2.12E-134 dispersed
Bma13g00510 Bma-Chr13:9806958 Bma13g01124 Bma-Chr13:44342261 0 dispersed
Bma13g00510 Bma-Chr13:9806958 Bma14g00904 Bma-Chr14:10219310 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66847 PF00069 Pkinase 6.10E-37 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00510 K08286 - qsu:112027816 647.891