Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma13g00518 | ATGTCACAACAAGGGTGTGCCATCGAGCTTTACTTCGATCCCGCCCTCGAAAATCAGGTGTTGAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACTCAACTCATCGAAATCGAATCCCGCCCTCACATCACCCTCTTCTCCACCCCCTTCCTCGAGCCTGTGAAGGTTGAACCAATTCTCAAAACCTTGGCCTCCAAGCAAGAACCCTTGCCTCTTTCTTTCTCGTCAATCGGAAGTCTCCCAAGCGATAGCAATGTTCTTTTTTTCGGTCCCACGCCTTCGATTTCGCTTCTTCAGCTTCAGTCTCAGTTGTGCGAAGCATTGAGGAAAGAAGGAATCGAAATTGGGGAAGAATATCGGCTCGATTCTTGGATTCCCTATTGTGCCGTTGCCGAGGAGGTACCTAAAGTTCGGATGGCGGAGGCCTTTTCTGTTATTCGGGACCTGAAATTGCCTGTTTCCGGATACGCCATGGACATTGGATTGGTGGAGTTTTCTCCAGTTCGTGAACTCTTCTCCTTGGCGCTCGGCAGCCCCATAGAGCCCCGAGACGGAGAATTATTGCTTCCTTAG | 579 | 50.09 | MSQQGCAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPVKVEPILKTLASKQEPLPLSFSSIGSLPSDSNVLFFGPTPSISLLQLQSQLCEALRKEGIEIGEEYRLDSWIPYCAVAEEVPKVRMAEAFSVIRDLKLPVSGYAMDIGLVEFSPVRELFSLALGSPIEPRDGELLLP | 192 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 10283436 | 10284696 | - | Bma009308.1 | Bma13g00518 | 93247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma13g00518 | 192 | SUPERFAMILY | LigT-like | 5 | 160 | IPR009097 | - | |
| Bma13g00518 | 192 | Gene3D | Cyclic phosphodiesterase | 6 | 177 | - | - | |
| Bma13g00518 | 192 | Pfam | 2'-5' RNA ligase superfamily | 42 | 157 | - | - | |
| Bma13g00518 | 192 | PANTHER | - | 4 | 181 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma13g00518 | Bma-Chr13:10283436 | Bma14g01523 | Bma-Chr14:30727113 | 3.74E-114 | dispersed | |
| Bma13g00518 | Bma-Chr13:10283436 | Bma05g00822 | Bma-Chr5:45578562 | 8.24E-49 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma13g00518 | - | - | csv:101208638 | 296.204 |