Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00522 ATGAATAGAATAATTTCCACGCCGGCGTCTAAGTTCCGCCATCTCCAGCGACGCATCATCAACCACACCTCCTCTGCCGCTGCTGCCGCTAACGACGATGAGCATCCACACTACCTTCTATGGCGCTACCAAATTCTCGATCCAGGCAGCGACATTGTAGCCCATTGGAACCACATTTTCCTCGTTACATGTCTCATCGCCCTCTTCATCGATCCTCTTTATTTCTATCTTCCTTCCGTTGGGGGTCCTGGCTGTCTCAAAACAGATACCAGTTTAGGAATCGCCGTCACCTTCTTCCGTACGGTGACCGATCTTTTCTACCTCCTGCATATGATTATGAAATTTCGTACGGCGTTTGTCGCTCCCAGTTCTAGGGTTTTCGGAAGGGGAGAATTGGTTATGGATGCAAGAGAAATTGCAATTAGGTACTTGAAATCAGATTTTGTGATTGATCTTGCCGCAACGCTTCCTCTCCCACAAATTGTCATCTGGTTAGTGATTCCAGCAATAAGACACTCCAGAGCTGATCATGCTAACAACACTCTATCTCTTTTTGTTCTTATACAATATGTTCCGAGGCTATTTCTCATCTTTCCTTTAAACCAGAGAATTATTAAAACTACTGGAGTTATCACAAAAACAGCCTGGGCAGGAGCTGCGTATAATCTCATTCTTTACATGCTTGCCAGCCATGTTTTAGGAGCTACATGGTATCTGCTTTCCATTGGTCGTCAATTCTCCTGCTGGAAATCGGAGTGTGCAAAGGAGAATGCTTCCAAAGTTTTGTCTTGTATCCCTAGTTTTCTAGATTGTTCTAGTTTGGAACTGCCCATAAGGCAATATTGGCTCAACGTCACTCAAGTCACTGCGAGATGCGATCCTAGGAACAAAAATATCAAATTCAAGTTTGGAATGTTTGCCGATGCCTTCACCAATGACGTTGCCACTTCACACTTTATTGAAAAGTACCTTTACAGTCTCTGGTGGGGCTTAAGGAGCTTAAGTTCGTATGGGCAAACTTTGGACACAACTACTTTCATCGGAGAGACAACATTTTGCATTTTCATTTGTATTGCTGGCTTGATTCTTTTTGCACAATTGATTGGTAACATGCAGACATATTTGCAATCAATCAACGTTAGAGTTGAAGAATGGAGGGTAAAGCGAAGAGATACAGAAGAATGGATGAGACACCGTCAGTTGCCACCGGACTTGCAGGAACGTGTTCGTCGCTTTGTCCATTACAAATGGCTTGCTGCAAGAGGAGTGAATGAAGAATCTATCCTGCAATCTTTACCTCCTGATCTTCGCCGTGAGATTCAGCGCCATTTGTGCCTCTCCCTTGTTCGTCGTGTCCCTTTCTTCTCCCAAATGGATGACCAGCTCATTGACGCCATATGTGAGCGTCTCGTCTCATCTTTAAGTACCCAAGGGACCTACATCGTTCGGGAGGGTGATCCAGTAAATGAAATGCTCTTCGTGATAAGAGGTCAGCTGGAGAGCTCCACCACTAATGGAGGTAGATCGGGCTTCTTCAACTCCATCACTCTAAGACCTGGCGACTTCTGTGGAGAGGAATTGCTGACTTGGGCATTAATGCCGAGTTCAAGCTTAAACCTCCCTTCTTCTACTCGCACTGTCAAAGCTCTTACTGAGGTTGAAGCTTTCACCCTCCATGCCGAAGACCTTAAATTTGTTGCAAGCCAGTTTAAGCGGCTTCACAGCAAGAAACTTCAGCATGCATTTAGATATTATTCCCATCAATGGAGGACATGGGGGGCTTGCTTTATACAGGCTGCTTGGAGGCGATTTCGGAAGAGGAAAATGGCCAAAGATCTAGCAATGCGAGAGAGCCTTTCCTACTTGCTATATAACGCGCAAACTAGTTATTACGACAACGAGGATGGAGATGGAAGATATGAAAATGACGAAGATGATAATCTGTCAATGGATAATTCAAACAATGCACAGCATCTTGGAGCCACCATTCTTGCTTCAAAATTCGCTGCAAATACAAAAAGAGGGTCTCACCAGAAAGTGGAACCAGGAAATCCGGCTTCTGCGAGCTTGAAGATGCCCAAGTTGTTCAAGCCAGATGAACCTGATTTCTCTCTTGACCATGAAGATATTTAG 2133 44.63 MNRIISTPASKFRHLQRRIINHTSSAAAAANDDEHPHYLLWRYQILDPGSDIVAHWNHIFLVTCLIALFIDPLYFYLPSVGGPGCLKTDTSLGIAVTFFRTVTDLFYLLHMIMKFRTAFVAPSSRVFGRGELVMDAREIAIRYLKSDFVIDLAATLPLPQIVIWLVIPAIRHSRADHANNTLSLFVLIQYVPRLFLIFPLNQRIIKTTGVITKTAWAGAAYNLILYMLASHVLGATWYLLSIGRQFSCWKSECAKENASKVLSCIPSFLDCSSLELPIRQYWLNVTQVTARCDPRNKNIKFKFGMFADAFTNDVATSHFIEKYLYSLWWGLRSLSSYGQTLDTTTFIGETTFCIFICIAGLILFAQLIGNMQTYLQSINVRVEEWRVKRRDTEEWMRHRQLPPDLQERVRRFVHYKWLAARGVNEESILQSLPPDLRREIQRHLCLSLVRRVPFFSQMDDQLIDAICERLVSSLSTQGTYIVREGDPVNEMLFVIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPSSSLNLPSSTRTVKALTEVEAFTLHAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRFRKRKMAKDLAMRESLSYLLYNAQTSYYDNEDGDGRYENDEDDNLSMDNSNNAQHLGATILASKFAANTKRGSHQKVEPGNPASASLKMPKLFKPDEPDFSLDHEDI 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 10439032 10442447 + Bma009317.1 Bma13g00522 93251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00522 710 Pfam Ion transport protein 56 382 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma13g00522 710 Gene3D - 59 376 - -
Bma13g00522 710 Gene3D Helix hairpin bin 377 445 - -
Bma13g00522 710 SMART cnmp_10 454 585 IPR000595 -
Bma13g00522 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 34 705 - -
Bma13g00522 710 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Bma13g00522 710 CDD CAP_ED 454 585 IPR000595 -
Bma13g00522 710 SUPERFAMILY cAMP-binding domain-like 383 579 IPR018490 -
Bma13g00522 710 MobiDBLite consensus disorder prediction 695 710 - -
Bma13g00522 710 Pfam Cyclic nucleotide-binding domain 477 564 IPR000595 -
Bma13g00522 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 34 705 - -
Bma13g00522 710 Gene3D Jelly Rolls 452 572 IPR014710 -
Bma13g00522 710 SUPERFAMILY Voltage-gated potassium channels 48 376 - -
Bma13g00522 710 MobiDBLite consensus disorder prediction 671 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00170 Bma-Chr8:2120933 Bma13g00522 Bma-Chr13:10439032 0 dispersed
Bma11g00665 Bma-Chr11:12624647 Bma13g00522 Bma-Chr13:10439032 0 dispersed
Bma13g00522 Bma-Chr13:10439032 Bma12g01200 Bma-Chr12:44952681 6.78E-127 dispersed
Bma13g00522 Bma-Chr13:10439032 Bma08g00382 Bma-Chr8:8627202 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00522 K05391 - mnt:21391781 1165.6