Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00568 ATGTATCATATTACTCTCGTAATAGGAAGGAGAATAGAGTGTCTTAGTTATGAGTTTCGAGGTTCAAATGTATGTTTCCCGCTTCATGTTCATATTTTCCTAAATGTTCTCAAACTTAGCGAATTTTCGAAGAATGTATCGTACGAGTTATCGTGTCCAAAATTCACCCTCCTAATAAGAAGGCTTAGTTATGGGTTATATTTTTGTCTCTTACACTTATATAACATTTTGTGCAGGAGTATCAATGCATCGAGTTCTCGGAGAAGCCTTGCATCCTGGTCCTGTGGAACCGGAAACCCCATTGATGATTGTTGGAGGTGTGACCCCACTTGGGAGTCAAACAGGCAACGGTTAGCTGATTGTGCTATTGGGTTTGGAAAGAATGCTATGGGAGGAAAAAATGGTCAAATCTACGTAGTCACCGACTCGAATGATGACGATCCAGTGAACCCTAGGCCCGGAACTCTTCGATATGCCGTTATACAAGATGAACCATTATGGATCATTTTTAAAAGAGATATGGTGATTCAATTAAGACAAGAGCTGGTGATGAATTCTTTCAAGACCATTGATGGTAGAGGGGCAAGCGTTCATATTGCTGGAGGGCCATGCATAACCATCCATTATGCTACAAACATCATCATACATGGAATTCACATACATGATTGCAAGCAAGGGGGGAATGGTAATATCCGGGACTCCCCACGACACTCCGGGTGGTGGACCGTATCAGATGGTGACGGAATTTCAATCTTTAATGGGAGGCATGTGTGGGTGGACCATTGCTCTCTTTCGAATTGTCGTGACGGTCTGATTGATGCCATACATGGCTCGACGGCTATTACCATCTCGAACAACTATATGACTCATCATGACAAGGTTATGCTTTTAGGTCACAACGATTATTTCGTACAAGACAAGAACATGCAAGTTACTATTGCCTTCAATCATTTTGGAGAAGGTCTTATCCAAAGAATGCCCAGATGTAGGCTAGGATTCTTCCATGTGGTGAACAATGATTACACTCATTGGGAAATGTATGCAATTGGAGGGAGTGCAAATCCCACCATTTACAGCCAAGGGAATAGATTTCTAGCTCCTAATGTAAGATTCAGAAAAGAGGTGACTAAACATGAAGATGCTCCTCAAAGTGAATGGATGCATTGGAATTGGCGATCCGAAGGAGACTTGCTGTTGAACGGTGCATATTTCCGGCAGTCGGGAGCCGGCGCATCATCTAACTACGTCAGGGCACACAGCCTCGGTGCCAAACCAGCTTCTTTTGTTGGCTCCATGACCGTGGCTGCCGGTGCACTTAGTTGCAGGAAGGGTTCTCGTTGCTAG 1344 43.75 MYHITLVIGRRIECLSYEFRGSNVCFPLHVHIFLNVLKLSEFSKNVSYELSCPKFTLLIRRLSYGLYFCLLHLYNILCRSINASSSRRSLASWSCGTGNPIDDCWRCDPTWESNRQRLADCAIGFGKNAMGGKNGQIYVVTDSNDDDPVNPRPGTLRYAVIQDEPLWIIFKRDMVIQLRQELVMNSFKTIDGRGASVHIAGGPCITIHYATNIIIHGIHIHDCKQGGNGNIRDSPRHSGWWTVSDGDGISIFNGRHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHNDYFVQDKNMQVTIAFNHFGEGLIQRMPRCRLGFFHVVNNDYTHWEMYAIGGSANPTIYSQGNRFLAPNVRFRKEVTKHEDAPQSEWMHWNWRSEGDLLLNGAYFRQSGAGASSNYVRAHSLGAKPASFVGSMTVAAGALSCRKGSRC 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12104081 12105868 + Bma009388.1 Bma13g00568 93297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00568 447 Pfam Pectate lyase 179 364 IPR002022 -
Bma13g00568 447 SMART amb_all 173 370 IPR002022 -
Bma13g00568 447 SUPERFAMILY Pectin lyase-like 99 438 IPR011050 -
Bma13g00568 447 PANTHER PECTATE LYASE 18-RELATED 83 444 IPR045032 GO:0030570
Bma13g00568 447 PANTHER PECTATE LYASE 83 444 - -
Bma13g00568 447 Gene3D - 98 440 IPR012334 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Bma13g00568 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00295 Bma-Chr7:3681275 Bma13g00568 Bma-Chr13:12104081 0 dispersed
Bma11g00322 Bma-Chr11:3033648 Bma13g00568 Bma-Chr13:12104081 0 dispersed
Bma13g00568 Bma-Chr13:12104081 Bma13g00744 Bma-Chr13:23362741 0 dispersed
Bma13g00568 Bma-Chr13:12104081 Bma06g00238 Bma-Chr6:3163295 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00568 K01728 - jre:109009664 685.641