Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00573 ATGTACTTGTCGGAGAAGCCCCGTCCGATTGATTTCTATAAAGAGGGAGAACCGGAGAGAGACATGATGATCGAGGTGGTGACCAGTGATAGTTTGCCGGCTCACCGCCACCACCACCACCTCCTCCACCACTCGCACCACCAGCAACATAACATGATTCTCGGCGATAGCAGTGGAGGCGAGGAGCCGGAAGTGAAAGCGCCGAAGAAACGAGCAGAGACTTGGGTTCAGGAAGAGACACGAAGTCTGATAAGCTTTCGCCGGGAAGTAGACGGACTTTTCAACACTTCAAAGTCCAATAAGCACCTATGGGAGCAGATCTCGGCCAAAATGAGAGATAAGGGTTTTGATCGATCGCCGACAATGTGCACGGATAAGTGGAGGAACTTGCTCAAAGAGTTCAAGAAGGCGAGGCAGCAGGCTAAAGGTGGCAGTAAATCGGCCAAGATGTCGTATTACGAGGAGCTGGAGGAGCTGCTTAGAGATAGGACCAAAAATGCTGGAGTTTATAAGAGCCCCACTCCCCATAAGATCGACTCATATATTCAATTTACTGATAAGGGTGAGAAATTCTTTAACATTCCCAATGACAGGTCGACTGTCAACTTGGAAAGGCAATTGGATCCTGATGGTGATCCTCTGGCAATTACCGCAGCTGATGCAGTTGGAGTCAATGGTGTACCTCCCTGGAACTGGAGGGAAACCCCTGGAAATGCAAGAGGGGATGGGCATTCGTCTTATTGTGGAAGGATTATATCAGTCAAGTTCGGAGACTATACTAGAAGAATCGGGATCGATGGAACATCAGATGCAATCAAGGAGGCCATTAAGTCTGCATTCAGGTTGAGGACTAAACGAGCATTTTGGTTGGAAGACGAAGACCGAGTCGTTCGGAGTCTCGACCGGGAAATGCCTCTGGGAAATTACACTCTTCACCTTGATGAGGGTATCGTAGATCTATCAAAACTTCGTTTACTTATCTCATCATCCGTTCTCGAGGTGATAAAACTTGAACTGCTATTGGCAGGAATCACATTAAAACTGTGTCTATACGATGAAAATGATCGAGTGGCCGTTCGGACAGAAGAGATTACACTGTACACGGAGGGCGACTTCCATGATTTTCTCAATCGACGTCGCTTCTCGGGTTTGAGAGAGCTTAGCAATTATAGATGCATCGACACTCTTGATGATCTTCATTCAGGTGAAATATATCAGGGGGTAAGACTTCTTGGTGACTAG 1242 47.26 MYLSEKPRPIDFYKEGEPERDMMIEVVTSDSLPAHRHHHHLLHHSHHQQHNMILGDSSGGEEPEVKAPKKRAETWVQEETRSLISFRREVDGLFNTSKSNKHLWEQISAKMRDKGFDRSPTMCTDKWRNLLKEFKKARQQAKGGSKSAKMSYYEELEELLRDRTKNAGVYKSPTPHKIDSYIQFTDKGEKFFNIPNDRSTVNLERQLDPDGDPLAITAADAVGVNGVPPWNWRETPGNARGDGHSSYCGRIISVKFGDYTRRIGIDGTSDAIKEAIKSAFRLRTKRAFWLEDEDRVVRSLDREMPLGNYTLHLDEGIVDLSKLRLLISSSVLEVIKLELLLAGITLKLCLYDENDRVAVRTEEITLYTEGDFHDFLNRRRFSGLRELSNYRCIDTLDDLHSGEIYQGVRLLGD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 12201969 12204885 + Bma009394.1 Bma13g00573 93302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00573 413 PANTHER OJ000223_09.13 PROTEIN 337 410 - -
Bma13g00573 413 PANTHER OJ000223_09.13 PROTEIN 5 317 - -
Bma13g00573 413 Gene3D - 75 137 - -
Bma13g00573 413 CDD GT1 73 138 - -
Bma13g00573 413 SMART sant 71 133 IPR001005 -
Bma13g00573 413 ProSiteProfiles Myb-like domain profile. 67 131 IPR001005 -
Bma13g00573 413 PANTHER - 337 410 - -
Bma13g00573 413 PANTHER - 5 317 - -
Bma13g00573 413 Pfam Myb/SANT-like DNA-binding domain 74 159 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00648 Bma-Chr9:43903555 Bma13g00573 Bma-Chr13:12201969 7.54E-08 dispersed
Bma13g00573 Bma-Chr13:12201969 Bma14g01358 Bma-Chr14:25261654 2.09E-113 dispersed
Bma13g00573 Bma-Chr13:12201969 Bma04g00367 Bma-Chr4:2943805 1.66E-11 transposed
Bma13g00573 Bma-Chr13:12201969 Bma01g02505 Bma-Chr1:82747969 7.33E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58224 PF13837 Myb_DNA-bind_4 6.00E-20 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00573 - - vvi:100264546 532.717