Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00592 ATGGCTGAAAATAAATCTTCCGAAATTAAGGACTTTCAGATTGTAGTAGCAGATAAAGAAGAGGGGAAGAAGCAATTAGCTCCAAAACGAAGCTCGAATAAAGATAGGCACACCAAGGTAGATGGTAGAGGTAGAAGGATAAGGATGCCAGCTCTGTGCGCAGCGAGGATTTTCCAATTGACAAGAGAATTAGGGCATAAATCAGATGGGGAAACCATCCAGTGGCTTTTGCAACAAGCGGAGCCGTCGATAATTGCGGCTACCGGGACCGGAACTATCCCGGCTTCTGCTTTAGCGGCGGCCGGAGTGTCTGTATCTCAGCAAGGGACCTCTTTATCAACTGGATTGCACCAAAAGATTGAGGATGATTTCGGAGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTGGGGGGCAATTTGGGGAGACCACCAACCCATATGGCTTCAGCGCTATGGCCTCAAGTCAGTAGCTTTGGGTTTCAGTCATCGTCTTCTCCGACAACAAATATGCCACCCGAGAGTGCAAATTACCTCCAGAAGATCGGCTTCCCCGGATTTGACTTGCCAGTCGGGAATATCGGTCCGATGAGTTTCACCTCGATTCTGAGCAGCAATAGCCAGCAGCTGCCGGAGCTGGGGCTAGGGTTGTCGCCGGAAGGTCACATCGGAGTTTTGAATCCACAGGCTTTCACCCAGATTTATCAGCAGATGCGGCAGGCTAGAGTTCATCCGCAACATCACCAAGCTTCTCCTAAGGATGATTCTCAAGGTTCAGGCTCAGCCAACTAG 789 50.06 MAENKSSEIKDFQIVVADKEEGKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGVSVSQQGTSLSTGLHQKIEDDFGGSGSRTSWAMVGGNLGRPPTHMASALWPQVSSFGFQSSSSPTTNMPPESANYLQKIGFPGFDLPVGNIGPMSFTSILSSNSQQLPELGLGLSPEGHIGVLNPQAFTQIYQQMRQARVHPQHHQASPKDDSQGSGSAN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13640844 13641632 + Bma009431.1 Bma13g00592 93321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00592 262 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 1 258 - -
Bma13g00592 262 MobiDBLite consensus disorder prediction 238 262 - -
Bma13g00592 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bma13g00592 262 MobiDBLite consensus disorder prediction 20 44 - -
Bma13g00592 262 Pfam TCP family transcription factor 32 119 IPR017887 -
Bma13g00592 262 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00592 - - - jre:108987051 393.275
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00596 Bma-Chr4:5709486 Bma13g00592 Bma-Chr13:13640844 1.96E-34 dispersed
Bma07g00154 Bma-Chr7:2172255 Bma13g00592 Bma-Chr13:13640844 2.22E-27 dispersed
Bma13g00592 Bma-Chr13:13640844 Bma14g01394 Bma-Chr14:26170313 2.23E-161 dispersed
Bma02g00655 Bma-Chr2:18238399 Bma13g00592 Bma-Chr13:13640844 4.46E-120 transposed
Bma13g00592 Bma-Chr13:13640844 Bma14g01410 Bma-Chr14:26659192 1.00E-160 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58226 PF03634 TCP 1.30E-31 No_clan Bma TF