Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00592 ATGGCTGAAAATAAATCTTCCGAAATTAAGGACTTTCAGATTGTAGTAGCAGATAAAGAAGAGGGGAAGAAGCAATTAGCTCCAAAACGAAGCTCGAATAAAGATAGGCACACCAAGGTAGATGGTAGAGGTAGAAGGATAAGGATGCCAGCTCTGTGCGCAGCGAGGATTTTCCAATTGACAAGAGAATTAGGGCATAAATCAGATGGGGAAACCATCCAGTGGCTTTTGCAACAAGCGGAGCCGTCGATAATTGCGGCTACCGGGACCGGAACTATCCCGGCTTCTGCTTTAGCGGCGGCCGGAGTGTCTGTATCTCAGCAAGGGACCTCTTTATCAACTGGATTGCACCAAAAGATTGAGGATGATTTCGGAGGGTCAGGAAGTAGGACCAGTTGGGCTATGGTGGGGGGCAATTTGGGGAGACCACCAACCCATATGGCTTCAGCGCTATGGCCTCAAGTCAGTAGCTTTGGGTTTCAGTCATCGTCTTCTCCGACAACAAATATGCCACCCGAGAGTGCAAATTACCTCCAGAAGATCGGCTTCCCCGGATTTGACTTGCCAGTCGGGAATATCGGTCCGATGAGTTTCACCTCGATTCTGAGCAGCAATAGCCAGCAGCTGCCGGAGCTGGGGCTAGGGTTGTCGCCGGAAGGTCACATCGGAGTTTTGAATCCACAGGCTTTCACCCAGATTTATCAGCAGATGCGGCAGGCTAGAGTTCATCCGCAACATCACCAAGCTTCTCCTAAGGATGATTCTCAAGGTTCAGGCTCAGCCAACTAG 789 50.06 MAENKSSEIKDFQIVVADKEEGKKQLAPKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGVSVSQQGTSLSTGLHQKIEDDFGGSGSRTSWAMVGGNLGRPPTHMASALWPQVSSFGFQSSSSPTTNMPPESANYLQKIGFPGFDLPVGNIGPMSFTSILSSNSQQLPELGLGLSPEGHIGVLNPQAFTQIYQQMRQARVHPQHHQASPKDDSQGSGSAN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 13640844 13641632 + Bma009431.1 Bma13g00592 93321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00592 262 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 1 258 - -
Bma13g00592 262 MobiDBLite consensus disorder prediction 238 262 - -
Bma13g00592 262 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 258 IPR005333 GO:0003700
Bma13g00592 262 MobiDBLite consensus disorder prediction 20 44 - -
Bma13g00592 262 Pfam TCP family transcription factor 32 119 IPR017887 -
Bma13g00592 262 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00596 Bma-Chr4:5709486 Bma13g00592 Bma-Chr13:13640844 1.96E-34 dispersed
Bma07g00154 Bma-Chr7:2172255 Bma13g00592 Bma-Chr13:13640844 2.22E-27 dispersed
Bma13g00592 Bma-Chr13:13640844 Bma14g01394 Bma-Chr14:26170313 2.23E-161 dispersed
Bma02g00655 Bma-Chr2:18238399 Bma13g00592 Bma-Chr13:13640844 4.46E-120 transposed
Bma13g00592 Bma-Chr13:13640844 Bma14g01410 Bma-Chr14:26659192 1.00E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58226 PF03634 TCP 1.30E-31 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00592 - - jre:108987051 393.275