Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma13g00613 | ATGAACAGTATTGAAGAATCAAGAACGAGATCTCCTATCGCTCCCCTCGCAACCCTAATTGGTCGTGAGCTCAGGAAAGAGAAGATTGAGAAACCTTTCGTGAAGTGTGGACAGGCTGCTTTGGCTAAGAAAGGAGAGGATTTGTTTTTGATCAAACCTGAATGCCAAAGGATTCCCGGAAACTCGACGACATCATTTTCGGTCTTTGCGATATTTGATGGCCATAATGGCATATCAGCTGCTATATTTACAAAGGAGCATTTATTGGGTAATGTCTTGAGTGCGATTCCCCCGGGGATTAGTCGGGAGGAGTGGCTTCAAACTCTTCCCCGTGCAATGGTTGCAGGTTTTGTGAAAACAGACATAGAGTTTCAGCAAAAAGGCATGGTTGGTCCCCTCCGTTGCTGGCCTGGTGGATTATGTCTTTCTAGGTCCATCGGAGACACAGATGTGGGAGAGTTTATTGTTCCAATACCCCACGTTAAACAAGTAAAGCTTTCAAAAGCTGGTGGACGCCTAATAATAGCTTCTGATGGAATATGGGACGCATTATCTTCCGATACGGCTGCCAAGTCTTGTCGCGGTTTACCTGCAGACCTCGCTGCAAAGTTAGTTGTCAAGGAGGCTCTAAGATCAAGGGGTCTTAAGGATGATACAACTTGCTTGGTTGTTGATATTATCCCATCAGATCATTCTATTTTACCGTCAACACCCCGGAAGAAGCAAAGTATATTCGATTCACTTATTTTCGGAAAGAAGTCTCAGAATTCAATGACCAAACCTGGAAATAAGCTCTTTGCTGTTGGAGCTGTTGAAGAATTGTTTGAAGAGGGTTCTGCAGTGCTTGCGGAGAGGCTAGGCAAGGATAGAAACTCAGGAATTTTCAAGTGTGCGGTCTGCCAAGTGGATCAATCCCCAAATGAAGGCTTATCCGCAAACTCAGGTCCTTTCTTTTCACCATCGTCGAAGCCTTGGGAAGGTCCTTTTCTATGTGCCAATTGTCGAAAGAAGAAAGATGCGATGGAAGGGAAAAAGCCAAGCAAGACGTGA | 1050 | 44.95 | MNSIEESRTRSPIAPLATLIGRELRKEKIEKPFVKCGQAALAKKGEDLFLIKPECQRIPGNSTTSFSVFAIFDGHNGISAAIFTKEHLLGNVLSAIPPGISREEWLQTLPRAMVAGFVKTDIEFQQKGMVGPLRCWPGGLCLSRSIGDTDVGEFIVPIPHVKQVKLSKAGGRLIIASDGIWDALSSDTAAKSCRGLPADLAAKLVVKEALRSRGLKDDTTCLVVDIIPSDHSILPSTPRKKQSIFDSLIFGKKSQNSMTKPGNKLFAVGAVEELFEEGSAVLAERLGKDRNSGIFKCAVCQVDQSPNEGLSANSGPFFSPSSKPWEGPFLCANCRKKKDAMEGKKPSKT | 349 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 14483023 | 14485223 | + | Bma009462.1 | Bma13g00613 | 93342 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma13g00613 | 349 | Gene3D | - | 129 | 229 | IPR036457 | - | |
| Bma13g00613 | 349 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 226 | IPR001932 | - | |
| Bma13g00613 | 349 | Gene3D | - | 36 | 128 | IPR036457 | - | |
| Bma13g00613 | 349 | PANTHER | PROTEIN PHOSPHATASE 2C 5-RELATED | 133 | 348 | - | - | |
| Bma13g00613 | 349 | PANTHER | PROTEIN PHOSPHATASE 2C 5-RELATED | 8 | 128 | - | - | |
| Bma13g00613 | 349 | PANTHER | ALPHABET, ISOFORM E-RELATED | 133 | 348 | - | - | |
| Bma13g00613 | 349 | PANTHER | ALPHABET, ISOFORM E-RELATED | 8 | 128 | - | - | |
| Bma13g00613 | 349 | SMART | PP2C_4 | 23 | 224 | IPR001932 | - | |
| Bma13g00613 | 349 | CDD | PP2Cc | 43 | 226 | IPR001932 | - | |
| Bma13g00613 | 349 | SUPERFAMILY | PP2C-like | 43 | 226 | IPR036457 | - | |
| Bma13g00613 | 349 | Pfam | Protein phosphatase 2C | 140 | 208 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma05g00267 | Bma13g00613 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma13g00613 | Bma-Chr13:14483023 | Bma14g01907 | Bma-Chr14:40766803 | 3.42E-44 | dispersed | |
| Bma13g00613 | Bma-Chr13:14483023 | Bma01g00627 | Bma-Chr1:5679783 | 1.07E-69 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma13g00613 | - | - | tcc:18600536 | 392.504 |