Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00619 ATGGTGGTCGCTGTTACCGTCGGAGTTAACATCAACGACGACGAGTCCTCCGACCCTGTGAGCAGTAACAAATCTCACGAGGTTTCTTCCTCCATTAAAGCCATCAAAGCTATCTGCGAAACAACGGATTACAAAACCGACTGCGTCAGTAGCCTCCAGGCTTCGGCCGGAGACACAAGCGACCCAAAAGATCTGATTCAAGCCGGGTTCAAAGCCGCCATTAAATACGTCAGAGAAGCTTCGAAGAAATCAACTACTCTTGAAGAGCTGGAGAAAGATCCGAGAACTGCCAAGGCGCTTGCCAATTGTAAAGAGCTGATGGATTCCGCCATTGTTGATCTGCAACAATCTGTTGACAAAATGGGAGAGTTTGATTTTTCGAAGTTGGATGAAATGCTTGATGATTTGAAGATTTGGCTCAGTGCTTCGATCACGTATCAAGAGACTTGTTTGGATGGATTCGAAAACACGACGAGCTCGGCCGCCGAGAAAATGAAATCGGCGCTGAAAACTTCGATGAGATTGAGCAGCAATGGCCTCGCAATGGTGTCGGAACTTTCCTCCGTCCTCACCGACTTCCATATCCCCGATTTCAGCCGCCGACTTCTCTCCCATGATGAGTTTCCGACCTGGGTCGATCCTAGAGTGAGAAGACTCCTCAGTTCTAACCCGAGAAGAATTAGGGCCGACGTCATCATCGCTAAGGATAGAACTGGCCATTACAAGACTATAAACGAAGCTTTATTACATGTTCCAAAACACAGCAATAAGACCTTTGTTATGTACATTAAAGCCGGAGTTTACCACGAAAACGTTCAGGTTAACAGGTCAATGACTCACTTGATGATGATCGGCGATGGAGCTGGAAGAACCAAAATCACCGGAAACAAGAACTTCATTGACGGCACCCCGACCTTTAAAACAGCAACCGTCGCTGTTCTTGGGGACTTCTTCATAGCAAAAGACATTGGATTTGAGAACACTGCCGGCGCCGCCAAACATCAGGCAGTAGCCCTAAGAGTCCAGTCGGACATGTCCATCTTTTACAGATGCTCAATGGATGGCTACCAAGACACTCTCTACACCCACACAAAGCGCCAATACTACCGAGACTGCACCGTCTCCGGGACCATCGACTTCATCTTCGGTGATTCCTCCGCCGTGTTTCAGAACTGCACTTTTCTCGTTCGGAAGCCCTTGGATAACCAGCAATGCATCGTCACCGCGCAAGGAAGAAAGGATGTTCGCCAACCATCAGCCATCATTCTCCAAAACTGCAGAATCACTTCCGATGCCAGTTATTTCCCGGTGCGGAAGCAATTCCAAGCGTATCTCGGTCGTCCGTGGAAGGCATACTCGAGGACGATAATCATGGAGACTTTCATCGACGATCTGATTCAGCCCGAAGGTTGGATGCCATGGATGCGCAATTACGGGCTGAAAACATGCTTCTATTCAGAGTACAACAACTTCGGTCCTGGATCAACCAAATCGAAACGAGTTAAGTGGAGTGGAATCAAGAACATAACAGATCAAACAGCGATGAGTTTCACACCGGGGAGTTTCATCAGAGGAAATAAGTGGATTAAAGCTAGTGGAGTTCCTTATACTCCCGGAATGTTCTTTGTTCATAAGAAGAAAGCCGATTTACCATGA 1656 47.52 MVVAVTVGVNINDDESSDPVSSNKSHEVSSSIKAIKAICETTDYKTDCVSSLQASAGDTSDPKDLIQAGFKAAIKYVREASKKSTTLEELEKDPRTAKALANCKELMDSAIVDLQQSVDKMGEFDFSKLDEMLDDLKIWLSASITYQETCLDGFENTTSSAAEKMKSALKTSMRLSSNGLAMVSELSSVLTDFHIPDFSRRLLSHDEFPTWVDPRVRRLLSSNPRRIRADVIIAKDRTGHYKTINEALLHVPKHSNKTFVMYIKAGVYHENVQVNRSMTHLMMIGDGAGRTKITGNKNFIDGTPTFKTATVAVLGDFFIAKDIGFENTAGAAKHQAVALRVQSDMSIFYRCSMDGYQDTLYTHTKRQYYRDCTVSGTIDFIFGDSSAVFQNCTFLVRKPLDNQQCIVTAQGRKDVRQPSAIILQNCRITSDASYFPVRKQFQAYLGRPWKAYSRTIIMETFIDDLIQPEGWMPWMRNYGLKTCFYSEYNNFGPGSTKSKRVKWSGIKNITDQTAMSFTPGSFIRGNKWIKASGVPYTPGMFFVHKKKADLP 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 14730685 14732520 - Bma009473.1 Bma13g00619 93348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00619 551 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Bma13g00619 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 187 IPR035513 -
Bma13g00619 551 Gene3D - 224 540 IPR012334 -
Bma13g00619 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 187 IPR035513 -
Bma13g00619 551 Pfam Pectinesterase 230 526 IPR000070 GO:0030599|GO:0042545
Bma13g00619 551 PANTHER PECTINESTERASE 1 544 - -
Bma13g00619 551 CDD PMEI-like_3 37 188 - -
Bma13g00619 551 PANTHER PECTINESTERASE 1 544 - -
Bma13g00619 551 SUPERFAMILY Pectin lyase-like 228 539 IPR011050 -
Bma13g00619 551 Pfam Plant invertase/pectin methylesterase inhibitor 34 182 IPR006501 GO:0004857
Bma13g00619 551 MobiDBLite consensus disorder prediction 10 26 - -
Bma13g00619 551 MobiDBLite consensus disorder prediction 7 26 - -
Bma13g00619 551 TIGRFAM PME_inhib: pectinesterase inhibitor domain 29 186 IPR006501 GO:0004857
Bma13g00619 551 SMART PMEI_2 30 182 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma05g00270 Bma13g00619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00630 Bma-Chr1:5694230 Bma13g00619 Bma-Chr13:14730685 0 dispersed
Bma05g00269 Bma-Chr5:7592195 Bma13g00619 Bma-Chr13:14730685 1.36E-160 dispersed
Bma06g00801 Bma-Chr6:41239618 Bma13g00619 Bma-Chr13:14730685 1.29E-152 dispersed
Bma13g00619 Bma-Chr13:14730685 Bma13g01193 Bma-Chr13:45200804 1.14E-84 dispersed
Bma13g00619 Bma-Chr13:14730685 Bma14g00847 Bma-Chr14:9437581 9.96E-150 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00619 K01051 - csv:101207393 762.681