Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00643 ATGGCTGCCGGTGCGGAAGTTAATGAGTTCATATTCCGGTCAAAACTCCCCGATATTCACATCCCGAACGATCTTCCTCTGCATGCTTTCTGCTTCGAGAAACTATCAGAGGTTGGCTCTCGGCCGTGTCTGATCAATGGCTCTACCGGAGATATATTCACGTACGATGATGTTCGGCTAATGGCGAGAAAAGTGTCGGTGGGGCTTAAAAGCCTCGGCATCGGAAAAGGCGACGTTATCATGCTTTTGCTTCCCAACTGCCCGGAGTTTGTGTTTTCCTTCCTTGGCGCTTCGTACGGTGGAGCTATAATGACCGCTGCAAATCCGTTTTTCACTGCAGCGGAGATTGCCAAGCAAGCTAAAGCTTCAAAAGCAAAGGTCATTATAACCCAAGCTTGCTACTACGAGAAAGTGAAAGACCTAGCCGGAGTAAATATCATCTGCACAGACGCACCTCCGGAAGGGTGTTTGCATTTCTCCGAGCTCACTAAGTCCGACGGGGAAAACACTCCGGTGGTGGAAATATGCCCAGACGACGTCGTAGCCCTTCCGTATTCATCTGGAACTACTGGATTGCCCAAAGGTGTGATGTTGACCCATAAAGGGCTAGTGACGAGCGTAAGTCAGCAGGTCGACGGAGACAATCCGAACCTGTACTACGGAAGAGACCACGTCGTTCTCTGTGTTTTACCTCTCTTCCACATATATTCTCTCAACTCCGTTTTGCTCTGCGCGTTGAGATCGGGGGCTGCGATCTTGATAATGCAGAAGTTTGAGATCAAATCCCTGCTGAATTTGATTCAGAAGTATAAGGTTTCGGTGGCACCAATCGTGCCGCCGATTGTTTTGGCAATAGCAAAGTCGCCGGAGCTCGAGAACTACGATCTTTCGTCGATAAGGGTGCTGAAATCAGGCGGCGCCCCGCTGGGGAAGGAGCTTGAGGATACGGTGAGAGCCAAATTTCCGAAAGCGGTGCTTGGTCAGGGTTACGGAATGACAGAGGCAGGTCCAGTTCTAACAATGAGCCTAGCCTTCGCGAAGTACCCATCACCAGTAAAGCCAGGCGCTTGCGGTACTGTCATCCGGAACGCCGAGCTGAAGGTTCTTGACATAGAAACTGGCGCATCTCTGCCGCGCAACGCCCGTGGAGAGATCTGTATCAGAGGAGACCAGATCATGAAAGGCTACCTGAACGACCCAGAAGCCACCGACAGGACCATCGACAAACAAGGCTGGCTTCACACCGGCGACATAGGGTTCGTCGACGACGACGACGAGCTCTTCATAGTCGACAGACTAAAGGAGCTGATCAAATACAAAGGGTTTCAGGTGGCTCCGGCGGAGATTGAGGCCATTCTGCTAACTCACCCTCGAGTCTCCGACGCTGCCGTCGTACCAATGAAAGATGAACAAGCTGGAGAGGTTCCTGTTGCATTTGTTGTGACAGCAAAGAATTGCGAGCTCACTGAAGATGAAGTGGTATTCTACAAAAGACTGAACAGAGTATTCTTCATTGACGCGATTCCCAAGGCGCCCTCTGGCAAGATCTTGAGGAAAAACTTGAAAGCTATTTTAGATAATGGCCTACCCAATTAG 1596 50.5 MAAGAEVNEFIFRSKLPDIHIPNDLPLHAFCFEKLSEVGSRPCLINGSTGDIFTYDDVRLMARKVSVGLKSLGIGKGDVIMLLLPNCPEFVFSFLGASYGGAIMTAANPFFTAAEIAKQAKASKAKVIITQACYYEKVKDLAGVNIICTDAPPEGCLHFSELTKSDGENTPVVEICPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVSQQVDGDNPNLYYGRDHVVLCVLPLFHIYSLNSVLLCALRSGAAILIMQKFEIKSLLNLIQKYKVSVAPIVPPIVLAIAKSPELENYDLSSIRVLKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMSLAFAKYPSPVKPGACGTVIRNAELKVLDIETGASLPRNARGEICIRGDQIMKGYLNDPEATDRTIDKQGWLHTGDIGFVDDDDELFIVDRLKELIKYKGFQVAPAEIEAILLTHPRVSDAAVVPMKDEQAGEVPVAFVVTAKNCELTEDEVVFYKRLNRVFFIDAIPKAPSGKILRKNLKAILDNGLPN 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 15570133 15573006 - Bma009508.1 Bma13g00643 93372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00643 531 Gene3D - 5 433 IPR042099 -
Bma13g00643 531 ProSitePatterns Putative AMP-binding domain signature. 183 194 IPR020845 -
Bma13g00643 531 Gene3D - 434 528 IPR045851 -
Bma13g00643 531 Pfam AMP-binding enzyme C-terminal domain 448 515 IPR025110 -
Bma13g00643 531 CDD 4CL 21 521 - -
Bma13g00643 531 SUPERFAMILY Acetyl-CoA synthetase-like 7 527 - -
Bma13g00643 531 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 6 525 - -
Bma13g00643 531 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 525 - -
Bma13g00643 531 Pfam AMP-binding enzyme 40 439 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma11g00683 Bma-Chr11:15241638 Bma13g00643 Bma-Chr13:15570133 0 dispersed
Bma13g00643 Bma-Chr13:15570133 Bma15g00435 Bma-Chr15:4732976 0 dispersed
Bma14g00071 Bma-Chr14:875393 Bma13g00643 Bma-Chr13:15570133 7.70E-108 dispersed
Bma13g00643 Bma-Chr13:15570133 Bma13g00646 Bma-Chr13:15816539 4.00E-17 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00643 K01904 - jre:108986343 822.002