Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00660 ATGGCGGATCTCAAAGAACGATTGCTTCCTCCTAGACCTGCATCTGCCATTAACCTTAGGGAGTCATCTCATCGTCCATCAGCCAGTGGAAGGCAGCCTTTTCAAGGCGTGGATGTTCCGGGATTGAAGAAACGAGGCCCAGGGCTTAGATCTTGGATTCGGGTTGACCTTGCTGGGAACTCTCAAATCATTGAGGTTGATAAGTTCACCATGATGCGACGTTGTGATCTTCCTGCTCGTGATCTTCGTCTGCTTGATCCTCTTTTCGTTTATCCATCTACAATACTTGGTAGAGAGAAGGCTATTGTCGTTAATTTGGAGCAAATTCGATGCATTATCACTGCAGATGAGGTTCTGTTATTGAATTCACTTGATAGTTATGTTCTGCAATATGTAGTAGAACTCCAACGCCGACTAACAGGTAATGGGACTGGGGAGGTTTGGCAATCTCAAAGTCTAGACTTGAACTGGAGGAGTGGAAATAGACACTTGCAGAATGCGTTTGGTAGCACATCACCTGATTATTTACCCTTTGAGTTTAGGGCTCTAGAAGTTGCTCTTGAAGCTGCTTGTACGTTTCTCGATTCTCAGGCAGCAGAATTAGAAATAGAAGCATATCCACTGTTAGATGAACTCACATCAAAGATCAGTACATTAAATCTGGAACGTGCACGACGACTGAAAAGCAGACTCGTTGCCTTGACTCGCAGAGTTCAGAAGGTTAGGGATGAAATAGAGCAACTCATGGATGATGATGGTGACATGGCTGAAATGTATCTCACAGAGAAGAAAAGGCGGATGGAGACTTCCTTTTATGGCGATCAGTCTTTGATGACATACAGATCAAACGAAGGAGCCTCAGCCTCTGCTCCGGTTTCACCTGTATCCTCCCCTCCTGAAGCACGAAAGCTCGAGAAAAGCTTGAGTATTGCCAGAAGTCGACATGAGAGCATGAGGAGTTCAGAAAGCGCTGCCGACAGTATAGAAGAGCTCGAGATGTTGCTTGAAGCATATTTTGTCGTCATTGATAGCACCTTAAATAAGTTGACATCATTGAAAGAGTACATCGACGACACAGAAGATTTCATCAACATTCATTTGGATAACGTGAGAAATCAGCTGATCCAATTTGAGCTACTACTCACAACAGCAACATTCGTGGTTGCAATCTTCGGGGTGGTTGCCGGGATCTTTGGTATGAACTTTTCAATACCACTTTTCGACGATGAAGGCGCGTTTAAGTGGGTTCTTGTAATCACAGGAGTAAGTGGTGTATGCATTTTTCTTGGATTCCTTTGGTTTTTCAAATATAGAAGACTCATGCCATTGTAG 1332 43.92 MADLKERLLPPRPASAINLRESSHRPSASGRQPFQGVDVPGLKKRGPGLRSWIRVDLAGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLTGNGTGEVWQSQSLDLNWRSGNRHLQNAFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERARRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMETSFYGDQSLMTYRSNEGASASAPVSPVSSPPEARKLEKSLSIARSRHESMRSSESAADSIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIHLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFSIPLFDDEGAFKWVLVITGVSGVCIFLGFLWFFKYRRLMPL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 16386481 16389000 + Bma009536.1 Bma13g00660 93389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00660 443 Gene3D Magnesium transport protein CorA, transmembrane region 156 374 - -
Bma13g00660 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Bma13g00660 443 MobiDBLite consensus disorder prediction 305 322 - -
Bma13g00660 443 Pfam CorA-like Mg2+ transporter protein 342 429 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Bma13g00660 443 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 443 - -
Bma13g00660 443 MobiDBLite consensus disorder prediction 1 42 - -
Bma13g00660 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 380 433 IPR045863 -
Bma13g00660 443 CDD Mrs2_Mfm1p-like 52 440 IPR039204 -
Bma13g00660 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 443 IPR039204 -
Bma13g00660 443 MobiDBLite consensus disorder prediction 283 322 - -
Bma13g00660 443 Coils Coil 224 251 - -
Bma13g00660 443 Gene3D - 42 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00660 K16075 MRS2, MFM1; magnesium transporter - zju:107406935 749.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g00007 Bma-Chr12:267972 Bma13g00660 Bma-Chr13:16386481 4.50E-115 dispersed
Bma12g00295 Bma-Chr12:4172559 Bma13g00660 Bma-Chr13:16386481 7.22E-59 dispersed
Bma06g00739 Bma-Chr6:38397233 Bma13g00660 Bma-Chr13:16386481 9.81E-155 transposed
Bma07g01468 Bma-Chr7:50336108 Bma13g00660 Bma-Chr13:16386481 6.75E-21 transposed
Bma12g00023 Bma-Chr12:735368 Bma13g00660 Bma-Chr13:16386481 2.11E-97 transposed
Bma10g00852 Bma-Chr10:15344481 Bma13g00660 Bma-Chr13:16386481 2.94E-34 wgd
Bma10g00852 Bma-Chr10:15344481 Bma13g00660 Bma-Chr13:16386481 2.94E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g869 . . . . . . . Bma13g00660 . . . Cma14g01051 Car01g00165 Car14g00950 . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00506 . Bda12g00562 . . . . . Cmo01g00196 Cmo14g01066 . . . . Cpe02g01612 Cpe03g00907 . . . . . . . . . . . . . . . Csa03g02968 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma13g00660 . 1 443 MRS2 Gene Family AT1G16010 82.7 1.4e-198 689.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G16010 56.7 1.4e-113 406.8
Bma12g00007 . 1 498 MRS2 Gene Family AT3G19640 62.2 5.3e-151 531.2
Bma12g00023 . 1 447 MRS2 Gene Family AT3G58970 63.6 3.6e-143 505.0
Bma06g00739 . 26 417 MRS2 Gene Family AT2G03620 66.8 4.3e-133 471.5
Bma13g00660 . 13 443 MRS2 Gene Family AT2G03620 52.5 1.5e-109 393.3
Bma12g00023 . 62 446 MRS2 Gene Family AT4G28580 50.5 4.0e-91 332.0
Bma13g00660 . 50 379 MRS2 Gene Family AT5G09690 51.1 2.6e-74 275.8
Bma13g00660 . 1 443 MRS2 Gene Family AT1G80900 82.4 4.4e-197 684.1
Bma06g00739 . 36 417 MRS2 Gene Family AT1G80900 57.0 2.1e-114 409.5
Bma07g01468 . 121 460 MRS2 Gene Family AT5G22830 81.5 2.6e-155 545.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00660 Bma_Chr13 FPKM 0.093431 0.0 3.229486 3.392759 0.264932 0.247723 0.191075 0.625474 0.220863 0.232156