Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00679 ATGGATGGTGAAAAAGTTGTCTCCACAAGTCCAACCCCGGCAACTCTAGGAATTTGTGGTGCTTCTCTCTTTGATGGGTTAGTGAAAGATCATAGAGGTGGGAATGGTAGAGGATCCATTTTCAAGAGCTGTAAGTGCTTCAGTGTTGAAGAAGAGCTCAAAGAAGAAGGAAGTCTTCATTATGCATCTTGCACATTGCCATCTCCTCCTGTCTCACTGGCTAAAAAGGTTGGAGCGGAGTTTATAGGCACTCTTATGCTCATCTTTTCTGCGACAGCCACTGCCATTGTGAACAAAAAGACAAATGGCAGCGAGACACTCATCGGCCTTGCCTCCTCAGCAGGTCTAGCTGCTATGGTCGTCATTTTATCCACTGGACACATCTCAGGAGCTCATCTAAACCCAGCAATCACCATTTCGTTTGCTGCCTTAAAGCATTTTCCATGGAAACATGTTCCAGCATATATTGGTGCACAGGTGGTTGCATCTGTGTGCGCTGCATTTGCCTTGGATGCAATTTTTCACCCTATTATGGGCCGGGGAGTTACTGTTCCGTCAGGAGGATGTGACCAAGCTTTTGCTCTGGAATTTATCATCAGCTTTAACCTCATGTTTGTGACAACTGCAGTTGCCACTGACACAAAAGCTGTAGGAGAGCTAGCGGGAATTACTGTCGGAGCTACTGTCATGCTCAATATACTCATTGCTGGGGAAACAACAGGAGCGTCAATGAACCCAGTGAGAACTCTAGGACCAGCCATAGCTGCACACAACTTCAAAGACATATGGGTTTACCTCACTGCTCCTATCCTCGGGGCATTATGTGGTGCTGGAACTTATTGCGCTGTCAAGATGCCGGAAAAATAA 867 46.37 MDGEKVVSTSPTPATLGICGASLFDGLVKDHRGGNGRGSIFKSCKCFSVEEELKEEGSLHYASCTLPSPPVSLAKKVGAEFIGTLMLIFSATATAIVNKKTNGSETLIGLASSAGLAAMVVILSTGHISGAHLNPAITISFAALKHFPWKHVPAYIGAQVVASVCAAFALDAIFHPIMGRGVTVPSGGCDQAFALEFIISFNLMFVTTAVATDTKAVGELAGITVGATVMLNILIAGETTGASMNPVRTLGPAIAAHNFKDIWVYLTAPILGALCGAGTYCAVKMPEK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 17593319 17594978 - Bma009566.1 Bma13g00679 93408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00679 288 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Bma13g00679 288 PANTHER AQUAPORIN NIP2-1 4 287 IPR034294 -
Bma13g00679 288 Pfam Major intrinsic protein 72 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma13g00679 288 Gene3D Glycerol uptake facilitator protein. 48 288 IPR023271 -
Bma13g00679 288 PANTHER BNAA02G36290D PROTEIN 4 287 - -
Bma13g00679 288 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma13g00679 288 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma13g00679 288 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma13g00679 288 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma13g00679 288 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma13g00679 288 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bma13g00679 288 SUPERFAMILY Aquaporin-like 72 286 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00679 Bma-Chr13:17593319 Bma02g00090 Bma-Chr2:785914 1.26E-20 dispersed
Bma13g00675 Bma-Chr13:17421809 Bma13g00679 Bma-Chr13:17593319 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00679 K09874 - cit:102629705 427.172