Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00712 ACCAATTTCACCAGAGTTCTCAAACACCTACAAATGGAATTGGAATTCCCGCCGGAATCACTGTTCTTCCTGCCGGAATCATTTTCCTGGAAAGAGCTCTTCGATCACCAAAACTCTCTCCCGTTCAACATAGACGACTCGCAGGAAATGCTCCTGTACGAAGCAGTAGCAGAGGGAGTAAAGTTAGAAGTTTCAGAAAGCAGCTCTTTCGGAGCGATTAAGGAAGAGGAAGCGAGCTCCGGCTCTGAAAAAGAAGGGCAGCCATTTAAGGCAAAGTCGTACAGAGGGGTGAGGAGGAGGCCATGGGGGAAGTACGCTGCAGAAATAAGAGACTCAACTAGGCATGGGATAAGGGTATGGCTGGGGACGTTCGAGAGCGCAGAGGCAGCTGCCTTGGCCTACGATCAAGCAGCATTTTCACTGAGAGGTTCAATGGCGGTTTTGAATTTCCCTGTTGAAATGGTGAGCCAGTCTCTTAAGGAAATCAAGTACGGATTTGAAGATGGCTGCTCCCCTGTTACTGCCCTGAAGAGGAAGCATTCGATGAGGAAGAAGGGTGGTTCTAGGAAGAGCATAAAAATGGCGGAGAAGAGGAAGAAGAGTGTAGTGGTTTTAGAAGACTTGGGGAGTGAGTATTTAGAGCAGCTCTTGAGTTTATGTTCTTCAGATGCTCCAAATTCTTTGTGA 687 47.74 TNFTRVLKHLQMELEFPPESLFFLPESFSWKELFDHQNSLPFNIDDSQEMLLYEAVAEGVKLEVSESSSFGAIKEEEASSGSEKEGQPFKAKSYRGVRRRPWGKYAAEIRDSTRHGIRVWLGTFESAEAAALAYDQAAFSLRGSMAVLNFPVEMVSQSLKEIKYGFEDGCSPVTALKRKHSMRKKGGSRKSIKMAEKRKKSVVVLEDLGSEYLEQLLSLCSSDAPNSL 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 20969091 20969777 + Bma009629.1 Bma13g00712 93441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00712 228 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Bma13g00712 228 PRINTS Ethylene responsive element binding protein signature 133 153 IPR001471 GO:0003700|GO:0006355
Bma13g00712 228 SUPERFAMILY DNA-binding domain 93 153 IPR016177 GO:0003677
Bma13g00712 228 MobiDBLite consensus disorder prediction 73 92 - -
Bma13g00712 228 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
Bma13g00712 228 CDD AP2 92 152 IPR001471 GO:0003700|GO:0006355
Bma13g00712 228 Gene3D AP2/ERF domain 92 153 IPR036955 GO:0003700|GO:0006355
Bma13g00712 228 PANTHER DNA-BINDING DOMAIN 31 219 IPR044808 GO:0003700|GO:0009873
Bma13g00712 228 MobiDBLite consensus disorder prediction 77 92 - -
Bma13g00712 228 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 31 219 - -
Bma13g00712 228 Pfam AP2 domain 93 143 IPR001471 GO:0003700|GO:0006355
Bma13g00712 228 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00432 Bma-Chr13:8000882 Bma13g00712 Bma-Chr13:20969091 7.98E-58 dispersed
Bma13g00712 Bma-Chr13:20969091 Bma14g01233 Bma-Chr14:19694001 2.83E-55 dispersed
Bma14g01225 Bma-Chr14:19046272 Bma13g00712 Bma-Chr13:20969091 7.31E-24 dispersed
Bma15g00639 Bma-Chr15:9146437 Bma13g00712 Bma-Chr13:20969091 5.48E-61 transposed
Bma10g00419 Bma-Chr10:4382388 Bma13g00712 Bma-Chr13:20969091 1.49E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58234 PF00847 AP2 9.00E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00712 K14516 - pop:7454341 248.825