Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00744 ATGCGCCGGAAGCACCTGGCCGACTGTGGCATTGGATTCGGACGCAATGCTATTGGTGGTCGAGATGGTCGATTCTATGTAGTCTCCGATTCTGGAGATGACGACCCTGTGAATCCGAGGCCTGGCACTCTTCGCCACGCTGTTATTCAGGATCAGCCTCTGTGGATAGTGTTTAAGCGTGATATGGTGATCACTTTGAAGCAAGAGCTCATTATGAACAGCTTTAAGACGATTGATGGTCGTGGTGTAAACGTTCGTATTGCTTATGGGGCTTGCATTACGATTCAGTTCGTTACGAACGTCATTATCCACGGCATCCACATTCACGATTGCAAGCCGACTGGCAATGCGATGGTGAGAAGCTCGCCTAGCCATTACGGGTGGAGGACGATGGCCGATGGGGATGCTATTTCCATCTTTGGGTCGAGTCATATTTGGATCGACCACAACTCTCTCTCCAATTGTGCCGATGGCCTAGTTGACGCTGTTATGGGTTCTACTGCCATTACCATTTCGAACAACTACTTCACTCACCACAACGAGGTAATATTACTGGGTCATAGTGACTCATATACAAGGGACAAGCAAATGCAAGTGACAATTGCCTACAATCATTTTGGAGAGGGTCTCATCCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTTGTAAACAACGACTACACACACTGGGAAATGTATGCCATTGGTGGAAGTGCTGATCCCACAATTAACAGCCAGGGGAATAGATACCTTGCCCCTACAAACCCTTTTGCAAAAGAGGTTACAAAGAGGGTCGATACGAACACATATCGATGGAGACACTGGAATTGGAGATCAGAAGGAGACCTGTTGCTAAATGGAGCCTTCTTCATTCCATCAGGAATTGGGGTCGGAGCAAGTTATGCAAGAGCATCCAGTTTGGGAGCCAAGTCGTCCTCCTTGGTCGCCTCCATCACCTCCGGTGCAGGTGCTCTTTCTTGTCGCCGAGGCTATCAGTGTTAA 1008 48.21 MRRKHLADCGIGFGRNAIGGRDGRFYVVSDSGDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVRIAYGACITIQFVTNVIIHGIHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPTNPFAKEVTKRVDTNTYRWRHWNWRSEGDLLLNGAFFIPSGIGVGASYARASSLGAKSSSLVASITSGAGALSCRRGYQC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 23362741 23364002 - Bma009674.1 Bma13g00744 93473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00744 335 Gene3D - 1 328 IPR012334 -
Bma13g00744 335 SUPERFAMILY Pectin lyase-like 7 335 IPR011050 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 9 26 IPR018082 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 306 329 IPR018082 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 133 154 IPR018082 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 69 85 IPR018082 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 235 254 IPR018082 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 213 232 IPR018082 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 277 301 IPR018082 -
Bma13g00744 335 PRINTS Pollen allergen Amb family signature 33 58 IPR018082 -
Bma13g00744 335 PANTHER PECTATE LYASE 2 332 - -
Bma13g00744 335 Pfam Pectate lyase 70 250 IPR002022 -
Bma13g00744 335 PANTHER PECTATE LYASE 18-RELATED 2 332 IPR045032 GO:0030570
Bma13g00744 335 SMART amb_all 61 258 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01041 Bma-Chr4:18879376 Bma13g00744 Bma-Chr13:23362741 0 dispersed
Bma05g01283 Bma-Chr5:52172390 Bma13g00744 Bma-Chr13:23362741 0 dispersed
Bma13g00568 Bma-Chr13:12104081 Bma13g00744 Bma-Chr13:23362741 0 dispersed
Bma13g00744 Bma-Chr13:23362741 Bma04g01050 Bma-Chr4:19126066 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00744 K01728 - mnt:21398282 651.744