Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00772 ATGGTAAAAGCAAAGCAGTTCAAAGGTGTAAGACAGCGTCGATGGGGCTCCTGGGTTTCTGAGATTCGTCATCCTTTACTGAAAAGAAGGGTTTGGCTAGGGACGTTTGAATCTGCAGAAGAGGCAGCTAGAGCATATGATGAGGCTGCCATATTGATGAACGGCCCAAATGCCAAAACAAACTTTCCGTCGATCACAAACAAGGCAGCCGGCGATGAGAGTAAGTCTACATCATCTTCTCCGAATTTACTTTCCAACGTCCTCAGCACTAAGCTTCGAAAATGCTGCAAATCTCCATCTCCTTCCCTCACTTGCCTAAGGCTTGACCTCGAGAATTCTCGGATCGGAGTGTGGCAGAAGAGTGGAGGGCCACGTTCTGATTCAAGCTGGGTTATGATGGTGGAGTTGGCCGGAAAAAAAGATGAAGGAAACTTTTTACCGGAACTGATCCTCCCAGAGACGTTGCCGGAGAAGGGTTATGGGCGGCTGGATGGTGGAGGTGCATCTGAGGAGGAGAGGATTGCGTTGCAAATGATAGAAGAACTATTGATAGGAATCGAGCCAAATTAA 570 47.89 MVKAKQFKGVRQRRWGSWVSEIRHPLLKRRVWLGTFESAEEAARAYDEAAILMNGPNAKTNFPSITNKAAGDESKSTSSSPNLLSNVLSTKLRKCCKSPSPSLTCLRLDLENSRIGVWQKSGGPRSDSSWVMMVELAGKKDEGNFLPELILPETLPEKGYGRLDGGGASEEERIALQMIEELLIGIEPN 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 27535521 27536257 + Bma009738.1 Bma13g00772 93501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00772 189 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bma13g00772 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bma13g00772 189 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Bma13g00772 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bma13g00772 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 183 - -
Bma13g00772 189 MobiDBLite consensus disorder prediction 63 82 - -
Bma13g00772 189 SUPERFAMILY DNA-binding domain 6 63 IPR016177 GO:0003677
Bma13g00772 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 183 - -
Bma13g00772 189 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bma13g00772 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bma13g00772 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00886 Bma-Chr9:48133704 Bma13g00772 Bma-Chr13:27535521 2.81E-35 dispersed
Bma11g00863 Bma-Chr11:31135087 Bma13g00772 Bma-Chr13:27535521 3.12E-69 dispersed
Bma13g00772 Bma-Chr13:27535521 Bma08g00799 Bma-Chr8:45611279 1.59E-21 dispersed
Bma13g00772 Bma-Chr13:27535521 Bma06g01066 Bma-Chr6:47475190 1.75E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58241 PF00847 AP2 4.80E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00772 - - qlo:115992483 226.868