Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00826 ATGGGCGTGGACATGTCCAATAATCAGCGGACTTCTCGAACCAAAGACTTCTTTGCCTCTCCAGCTCTCTCCCTCAGCCTTGCCGGGATTTTCCGCGATGCCGGAGCTGCAGCTGCAGCGGCTAACATCGAGGTGGAGGAAGGAGATGAAGGGAGCGGCGGAGGGCAAAGAGAAGACACTGTGGAGGTTAGTAGTGAGAACTCCGGCCTTGCTAGATCGAGATCAGAGGACGACTTTGATCCGGACGGAGAGCATGATGATGAGGATGAAGATGGAGATAAGAGTAAGAAGAAGAAAAGGAAAAAGTATCATAGGCACACAGCAGACCAAATAAGAGAAATGGAAGCGCTGTTCAAAGAGTCACCTCATCCAGATGAGAAGCAGAGGCAACAGCTGAGTAAACAATTGGGCTTGGCCCCAAGACAAGTCAAGTTCTGGTTCCAAAATCGGAGAACCCAAATCAAAGCAATGCAAGATCGCCATGAAAATACTTTGCTGAAGACAGAGATGGACAAACTGAGAGACGAAAATAAAGCCATGAAAGAGTCAATAAACCAATCTTCTTGCCCCAATTGTGGCACTGTCACTGCTAGCAGAGACCTTGCCTTGACGACAGAGGAGCAACAGCTACGACTCGAAAATACCAAACTCAAAGCCGAGGTGGAAAAACTGCGAACGTCTCTCGGAAGATACCCTCCGGGGACATCCCCTCTGTCGTGTGCAGCCAAAAATGACCAGGAAAACCTAAGCTCATTGGATCGCTACACTGGAATTTTCGGACTCAAGAAATCGAGAATCATGGAAATAGTCAATCAAGCAATGGATGAGCTCAAAAAGATGGCCACAGCCGGAGAACCACTTTGGATCCGGAGTGTCGAGACTGGTCGAGAATTACTAAATTACGACGAGTATATTAAAGAATTCACTGTCAATAGCTCCAGCAATAGCAGTCCAAAGCAATCCATCGAGGCCTCCAGAGAGACGGGACTGGTGTTCCTGGACTTATCACGACTGGTGCAGAGTTTCATTGATGTGAATCAATGGAAGGAAATGTTTCCGTGGATGATCTCAAAAGCCACTACGCTCGACATTATCAGCGATGGCGAAGGTCCAAATAAGAATGGATCAGTGCAATTGATGTTTGCAGAGCTACAAATGCTTACGCCAATGGTGGCTACAAGAGAAGTGGATTTTATCAGATACTGCAAGCAGCTGAGTGCTGAACAGTGGGCCATTGTTGATGTCACCATTGATAAAGTTGAAGATAATATTGACGCTTTGTTAATGAAGTGCCGAAAGCGGCCTTCTGGTTGCATCATCGAAGATAAATCTGGTCACTGCAAGGTGATTTGGGTGGAACATTTAGAATGTCAGAAAAACACAGTTCATAGCATGTACCGAACGGTCGTTAACAGGGGTTTAGCCTTCGGGGCGAGGCATTGGATGGCTACGCTGCAACTCCAATGTGAACGGCTTGTTTTCTTCATGGCCACCAACGTACCCATGAAGGACTCTACAGGAGTTGCCACGGTGGCCGGGAGGAAAAGCATGCTGAAGTTGGCGCAGAGAATGACGTGTAGCTTTAGTCATGCAATTGGAGCATCAAGCTTCACTACATGGAATAAGGTCTCCAGCAAAACCGGGGAAGACATTCGAGTCGCTTCTAGAAAGAACTCTAACGACCCAGCAGAGCCTCTCGGGTTGATCTTATGTGCTGTTTCATCTGTTTGGCTTCCTGTTTCTCCTTCTGTCTTGTTTGATTTCTTAAGAGATGAAACTCACAGAAACGAGTGGGACATAATCTTCACTGGAGGCCAAGCACAATCCATTGCCAACTTAGCCAAAGGACAAGACCGTTGCAATGCAGTTTCCATTCAAACGATAAAATCGAAGGAGAATAGCATTTGGATACTCCAAGACAGCTGCACAAATGCTTTTGAATCCATGGTTGTCTATGCTCAAGTAGACGTTACAGGCATGCAATCAGTGATGACAGGTTGTGACTCTAGCAACATCGCGATGTTGCCTTCGGGTTTTTCGATTCTCCCCGATGGGCTTGAATCAAGACCCCAAGTCATTACTTCTAGGAAAGAGGAGAAGAGTGTGGAAGGAGGATCCTTGCTTACAGTAGCATTCCAAATCCTCACCAACACCTCTCCTACTGCAAAGTTAACAATGGAGTCTGTGGAGTACGCCAACAATGTCATGTCATTATCAAAACCCAGCCATTTTCTGACCTTTCTTTACTACCTTAGCTATGGCTTCCCTTATATTGTTAGCTTGCTGTCCATCCAGCCACCGTTAAAGGCCTGTGGAAGCTCCGTCACCGGCACAAAGCTTGCTCTCAAGCCCAAACGCCAGAGCCTCAGACCCAAGAATTTCAGTCAAGGAAATGGAAAACGTGCCTCTGGATATTTGCAGTTCCCTCAATGCCCAACGTGTAAGAAGTTCCATGATGGAGTGTGCAAGGCAGGTTCGGGCCGGTGCTTTATTTGTAATAAGCAAGGTCATATTTCTACGGACTGCCCAGGGAAGAATCTGGGAAGGTGTTTCAAGTGTCAGGAGATAGGACATCTCTCTAGAAATTGTCCGAAGAAAGGTAAAGGGCCGTGTTTTGTTTGCAATAGGACAGGTCATCTTGCCAGGGACTGCCCGACACGGATTAAAAGATCCGCAAGAGTATCGCCAAGGGTCTCCTCCCTCAGTAGTGCAGACAACGAAGGGCAGCATACCGCAGTCACAGGTACATTCCTTTTTAATTTATTTAAAGATAGAAATGTTAGATGA 2787 46.75 MGVDMSNNQRTSRTKDFFASPALSLSLAGIFRDAGAAAAAANIEVEEGDEGSGGGQREDTVEVSSENSGLARSRSEDDFDPDGEHDDEDEDGDKSKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAMQDRHENTLLKTEMDKLRDENKAMKESINQSSCPNCGTVTASRDLALTTEEQQLRLENTKLKAEVEKLRTSLGRYPPGTSPLSCAAKNDQENLSSLDRYTGIFGLKKSRIMEIVNQAMDELKKMATAGEPLWIRSVETGRELLNYDEYIKEFTVNSSSNSSPKQSIEASRETGLVFLDLSRLVQSFIDVNQWKEMFPWMISKATTLDIISDGEGPNKNGSVQLMFAELQMLTPMVATREVDFIRYCKQLSAEQWAIVDVTIDKVEDNIDALLMKCRKRPSGCIIEDKSGHCKVIWVEHLECQKNTVHSMYRTVVNRGLAFGARHWMATLQLQCERLVFFMATNVPMKDSTGVATVAGRKSMLKLAQRMTCSFSHAIGASSFTTWNKVSSKTGEDIRVASRKNSNDPAEPLGLILCAVSSVWLPVSPSVLFDFLRDETHRNEWDIIFTGGQAQSIANLAKGQDRCNAVSIQTIKSKENSIWILQDSCTNAFESMVVYAQVDVTGMQSVMTGCDSSNIAMLPSGFSILPDGLESRPQVITSRKEEKSVEGGSLLTVAFQILTNTSPTAKLTMESVEYANNVMSLSKPSHFLTFLYYLSYGFPYIVSLLSIQPPLKACGSSVTGTKLALKPKRQSLRPKNFSQGNGKRASGYLQFPQCPTCKKFHDGVCKAGSGRCFICNKQGHISTDCPGKNLGRCFKCQEIGHLSRNCPKKGKGPCFVCNRTGHLARDCPTRIKRSARVSPRVSSLSSADNEGQHTAVTGTFLFNLFKDRNVR 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 33125334 33142085 - Bma009834.1 Bma13g00826 93555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00826 928 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677
Bma13g00826 928 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 16 738 - -
Bma13g00826 928 ProSiteProfiles Zinc finger CCHC-type profile. 849 865 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 Pfam Zinc knuckle 828 843 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 Pfam Zinc knuckle 849 865 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 Pfam Zinc knuckle 870 885 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 Coils Coil 207 227 - -
Bma13g00826 928 Gene3D - 85 169 - -
Bma13g00826 928 Gene3D - 870 897 - -
Bma13g00826 928 Gene3D - 822 846 - -
Bma13g00826 928 Gene3D - 847 869 - -
Bma13g00826 928 MobiDBLite consensus disorder prediction 36 110 - -
Bma13g00826 928 SMART HOX_1 99 161 IPR001356 GO:0003677
Bma13g00826 928 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 738 IPR042160 -
Bma13g00826 928 CDD START_ArGLABRA2_like 263 490 - -
Bma13g00826 928 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981|GO:0006355
Bma13g00826 928 Pfam Homeodomain 100 155 IPR001356 GO:0003677
Bma13g00826 928 ProSiteProfiles Zinc finger CCHC-type profile. 828 843 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 ProSiteProfiles START domain profile. 259 494 IPR002913 GO:0008289
Bma13g00826 928 SUPERFAMILY Retrovirus zinc finger-like domains 846 887 IPR036875 GO:0003676|GO:0008270
Bma13g00826 928 Coils Coil 163 183 - -
Bma13g00826 928 CDD homeodomain 104 158 IPR001356 GO:0003677
Bma13g00826 928 SUPERFAMILY Bet v1-like 263 491 - -
Bma13g00826 928 SMART c2hcfinal6 870 886 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 SMART c2hcfinal6 849 865 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 SMART c2hcfinal6 828 844 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 SUPERFAMILY Bet v1-like 538 735 - -
Bma13g00826 928 ProSiteProfiles Zinc finger CCHC-type profile. 871 885 IPR001878 GO:0003676|GO:0008270
Bma13g00826 928 SUPERFAMILY Homeodomain-like 86 158 IPR009057 -
Bma13g00826 928 Pfam START domain 269 491 IPR002913 GO:0008289
Bma13g00826 928 SMART START_1 268 491 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00959 Bma-Chr3:10191490 Bma13g00826 Bma-Chr13:33125334 7.76E-11 dispersed
Bma06g00094 Bma-Chr6:1428808 Bma13g00826 Bma-Chr13:33125334 1.76E-06 dispersed
Bma08g00782 Bma-Chr8:45138090 Bma13g00826 Bma-Chr13:33125334 3.90E-09 dispersed
Bma12g01265 Bma-Chr12:45678632 Bma13g00826 Bma-Chr13:33125334 1.50E-160 dispersed
Bma13g00826 Bma-Chr13:33125334 Bma06g01236 Bma-Chr6:49558018 0 dispersed
Bma01g01528 Bma-Chr1:32895765 Bma13g00826 Bma-Chr13:33125334 5.83E-18 transposed
Bma10g00774 Bma-Chr10:12466019 Bma13g00826 Bma-Chr13:33125334 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58245 PF01852 START 6.20E-48 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00826 K09338 - qsu:111988083 1138.25