Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma13g00840 | ATGCTCACAGTCAGCGACCACTATTGTTTTTCTGCTCGCACTGCCGTTCTCTCCGTCGACTATCTCGACAGGTTTCTCTGGAGCTTCCACTTTCAGAGAGAAAAGCCATGGATGATCCAGCTCGCAGCAGTGGCTTATCTCTCTTTAGCTGCGAAAATGGAGGAGACCCACGTTCCGCTTCTTCTGGATCTGCAGGTGAAAGAGAGTGGGTACTTATTCGAAGCGAAAACGATAAAGAGAACGGATATTCTGGTGCTCTCGACTCTTCAATGGCGGATGAATCCTGTCACTCCGCTTTCGTTCTTAGATTACATAACGCGAAGGCTTGGGTTAAGGGATCGTCTCTGCATAGAATTTCTCAGACGGTCTGAGCTAATCCTTCTCTTCATCATTACTGATTCCAGGTTCATGTCGTTTCTTCCATCTGTCATAGCCAACGCTATTGTGCTCCACCTTGTGTGTAACATAGAGCCAAGTCTTGCGGTTGAATACCAAAATCAACTGTTTAGTATTCTCAATATTGACAAGGCCAAAGTAGATGACTGTTACAGGCTTATTTTGTTACAGCTCTCAACGAGGAGAGCTGGACTTGATCGCCTCTCACTAGTTACCCAACTGACAAAACATTTTCGTGTTAGAGCCTCTGGAGAAAGAAGTTCAGTGAATGATCTTGGGCAAGTTTCCCCAATCTTTTGTTTGGCTATTCCGTCGTGGAAGAACCAGATTACGTTTAGAGCTTTGTTCACTAGCTTTATTTGGAGCATCATCTTCAACTTCATTGTCTACAAGCCTAATTTGACGACTGGTATTATTACTTTCCTCAATGTTGCCGCCGATTTGCTAGTTTTCGCCGTTGTAAGAGGCTACACCGCCTTGATTGATAAGTGCGGCCTCTTGAAGCAGCCTTTCACCCGCCAAGAAAACACTGTGAACATATCTATGTTTGCAACAGAGGGCCAAGCTTTTGCATTGAAGAATTTATTTTCTGGCAATCCAAAAATTGTTGTTGCTTCCCAGTTGTTTATGCTACCATATCCGAGTTACTCGCCCTGA | 1053 | 44.44 | MLTVSDHYCFSARTAVLSVDYLDRFLWSFHFQREKPWMIQLAAVAYLSLAAKMEETHVPLLLDLQVKESGYLFEAKTIKRTDILVLSTLQWRMNPVTPLSFLDYITRRLGLRDRLCIEFLRRSELILLFIITDSRFMSFLPSVIANAIVLHLVCNIEPSLAVEYQNQLFSILNIDKAKVDDCYRLILLQLSTRRAGLDRLSLVTQLTKHFRVRASGERSSVNDLGQVSPIFCLAIPSWKNQITFRALFTSFIWSIIFNFIVYKPNLTTGIITFLNVAADLLVFAVVRGYTALIDKCGLLKQPFTRQENTVNISMFATEGQAFALKNLFSGNPKIVVASQLFMLPYPSYSP | 350 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 35358155 | 35359207 | - | Bma009877.1 | Bma13g00840 | 93569 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma13g00840 | 350 | Pfam | Cyclin, N-terminal domain | 1 | 94 | IPR006671 | - | |
| Bma13g00840 | 350 | SUPERFAMILY | Cyclin-like | 1 | 94 | IPR036915 | - | |
| Bma13g00840 | 350 | Gene3D | - | 95 | 184 | - | - | |
| Bma13g00840 | 350 | Pfam | Cyclin, C-terminal domain | 96 | 190 | IPR004367 | - | |
| Bma13g00840 | 350 | CDD | CYCLIN | 1 | 81 | IPR013763 | - | |
| Bma13g00840 | 350 | PANTHER | CYCLIN D3.1 PROTEIN | 1 | 195 | - | - | |
| Bma13g00840 | 350 | Pfam | OPT oligopeptide transporter protein | 241 | 323 | IPR004813 | GO:0035673 | |
| Bma13g00840 | 350 | PANTHER | CYCLINS | 1 | 195 | IPR039361 | - | |
| Bma13g00840 | 350 | Gene3D | - | 1 | 94 | - | - | |
| Bma13g00840 | 350 | SMART | Cyclin_C_2 | 96 | 233 | IPR004367 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma13g00840 | Bma-Chr13:35358155 | Bma01g00666 | Bma-Chr1:6073282 | 7.75E-76 | dispersed | |
| Bma14g00105 | Bma-Chr14:1446625 | Bma13g00840 | Bma-Chr13:35358155 | 8.45E-14 | dispersed | |
| Bma14g02022 | Bma-Chr14:43579588 | Bma13g00840 | Bma-Chr13:35358155 | 1.69E-15 | dispersed | |
| Bma13g00836 | Bma-Chr13:35230413 | Bma13g00840 | Bma-Chr13:35358155 | 7.55E-14 | proximal | |
| Bma13g00837 | Bma-Chr13:35233530 | Bma13g00840 | Bma-Chr13:35358155 | 6.11E-118 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma13g00840 | K14505 | - | csin:114281778 | 269.24 |