Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00845 ATGGCGTCGGGGGCTGGATCTCCTTGCGGAGCCTGCAAGTTTCTGAGGCGCAAGTGTGCAGCGGATTGTATCTTTGCGCCTTATTTTTGCTCAGAACAAGGCCCTGCTCGATTTGCTGCCATCCATAAAGTGTTTGGAGCTAGCAATGTGTCGAAGCTTTTGCTGCATGTACCTGTTTCTGATCGCTGCGAGGCTGTTGTTACTATTGCTTACGAAGCTCAAGCTAGAATTAGAGACCCTGTTTATGGCTGTGTTTCTCATATTTTTGCTCTGCAACAACAGGTGGCATGCTTGCAAGCTCAACTAGTGCAAGCAAAGGCTCAGCTGGGTCAGAAAGTGATTGATTCTCGCAGAATAGGGAATCCATGGACACTGAATAACGTTGTTAATGGAGTTTCAAGCTTTCCAAATTACCCTTCTTACATAAACTCTATATCCCCACAGAGCTCAGTTGAATCCTTAGATTACACCAACGAAGCAGTAAATCTGCAGGAAATCCAAAGCAGATCAGAAGAAGAATTTCAATACCAGACTTTCTACAGGAAAAGACCTTATAATAGTGATGAACTTCAAGCATTGGCTTTCAGAATGACGAGGAGTTAG 603 44.28 MASGAGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVSDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLVQAKAQLGQKVIDSRRIGNPWTLNNVVNGVSSFPNYPSYINSISPQSSVESLDYTNEAVNLQEIQSRSEEEFQYQTFYRKRPYNSDELQALAFRMTRS 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 36303614 36304675 - Bma009894.1 Bma13g00845 93574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00845 200 Coils Coil 88 108 - -
Bma13g00845 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 2 199 - -
Bma13g00845 200 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Bma13g00845 200 Pfam Lateral organ boundaries (LOB) domain 8 106 IPR004883 -
Bma13g00845 200 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00845 Bma-Chr13:36303614 Bma14g00879 Bma-Chr14:9901680 2.92E-39 dispersed
Bma09g00604 Bma-Chr9:43218142 Bma13g00845 Bma-Chr13:36303614 1.86E-60 transposed
Bma10g00422 Bma-Chr10:4424258 Bma13g00845 Bma-Chr13:36303614 2.58E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58249 PF03195 LOB 9.20E-37 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00845 K13944 - qsu:111987550 265.774