Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00875 GCCCATTTATTGCTGGGATTAGCTTTATCCAAGAAAGAAGAATATCCCGAAGGAATTAAGCATTTAGAGAAGGCGTTGGCACTCTTTAAAGATGAGAACCCGAAGAATCCCATTGTAGAAGACATTTGGAAAGAAGTTGCAAGAGCAAAGTATTCAGAGTGGGAGCTCGCGTCCACATCCAGATCGTGGGAATTACAAAGCTTGAAGGAGGCTTGTGAGACGGCTTTTAAGCAAATGCATTTTCTTGAAAATTCTGAGGCTGAAGAAGTCTTTGATGAAGCTCATTTTTCCCATATCAAACAAATGGAAGCTTTAGATGCTGTATTTAGGAAAGTTTCGGAGGCGGATGTGCCGACTGAGATTCCGGATTATTTATGCTGTAAAATATCACTCGATATTCTCTGGGATCCTGTCATTACTCCTAGCGGTATTACATACGAGAGAGAAGTGATACTCGACCATATTCAAAAGGTGGGAAAGTTCGATCCCGTGACGAGAGAAGAGCTTGACGAATCGCAGCTTGTGCCAAACTTAGCGATTAAAGAAGCAGTGCAAGCGTTCCAAGACAAACACAGATGGGCATACCAGACAGATTGA 597 42.55 AHLLLGLALSKKEEYPEGIKHLEKALALFKDENPKNPIVEDIWKEVARAKYSEWELASTSRSWELQSLKEACETAFKQMHFLENSEAEEVFDEAHFSHIKQMEALDAVFRKVSEADVPTEIPDYLCCKISLDILWDPVITPSGITYEREVILDHIQKVGKFDPVTREELDESQLVPNLAIKEAVQAFQDKHRWAYQTD 198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38081582 38083446 + Bma009945.1 Bma13g00875 93604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00875 198 Coils Coil 65 85 - -
Bma13g00875 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 1 196 IPR045200 GO:0000209|GO:0061630
Bma13g00875 198 SUPERFAMILY RING/U-box 114 195 - -
Bma13g00875 198 Pfam U-box domain 121 193 IPR003613 GO:0004842|GO:0016567
Bma13g00875 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 197 IPR013083 -
Bma13g00875 198 SMART Ubox_2 124 187 IPR003613 GO:0004842|GO:0016567
Bma13g00875 198 ProSiteProfiles U-box domain profile. 120 194 IPR003613 GO:0004842|GO:0016567
Bma13g00875 198 CDD RING-Ubox_CHIP 121 187 IPR045202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00875 Bma-Chr13:38081582 Bma13g00881 Bma-Chr13:38260235 1.35E-139 dispersed
Bma13g00874 Bma-Chr13:38014965 Bma13g00875 Bma-Chr13:38081582 1.60E-127 tandem
Bma13g00875 Bma-Chr13:38081582 Bma13g00876 Bma-Chr13:38130207 5.98E-119 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00875 K09561 - csv:101215457 286.574