Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00876 ATGGGGCCGACAGTGCTCGTCGCAGAAAAACAAGCGGAACAACTGAAAAGGAAAGGCTACAGTCACTACAAGAAAGGTCGCTTTGGAGCTGCCAGAGATGCCTATACCGGGGCAATTACGTTATGCCCAAATGTTTCTGAGTATTGGGCAAAAAGAGCATGCCATCTCATGCTGAATGACTGGAAGAAGGCGGAGGAGGACAGCAGGAAAGCTATTGAGCTCGACAAAAGTAATGCCAAGGCCCATTATAACCTGGGATTAGCAATATCATGGAAAGAAGAACATCCTGAAGAAATCAAGCATTTAGAAAAGGCGTTGGCACTCATTAAAGGTAAGAACCCAAAGAGTCCCATTGTAGAACTCATTTGGAAAGCAGTTGCAATCGCAAAGTACTCAGAGTGGGAGCTCGAGTCCACATCTAGAGCGTGGGAATTACAAAGCTTGAAGTATGAGGCTTGTGAGACAGCTTTTAAGCAAATGCATATTCTTAAAAATTCTGAGTCTGCAGAAGTCTTTGATGAAGCTCATTATATCAAACAAATGGAGGCTTTAGATGCTGTATTTAGGAAAGTTTCGGAGGAGGATGAGCCGACTGAGGTTCCAGATTATTTATGTTGTAAAATATCACTCGATATTCTCTGGGATCCTGTCATTACTCCTAGCGGTATTACATACGAGAGAAAAGTGATTCTCGACCATATTCAAAAGGTGGGAAAGTTCGATCCGGTGACAAGGGAAGAGCTTGACGAATCACAGCTTGTGCCAAACTTTGCGATTAAAGAAGCAGTGGAAGCCTTCCAAGACAAACACAGATGGGCATATCAGACAGATTAA 834 43.29 MGPTVLVAEKQAEQLKRKGYSHYKKGRFGAARDAYTGAITLCPNVSEYWAKRACHLMLNDWKKAEEDSRKAIELDKSNAKAHYNLGLAISWKEEHPEEIKHLEKALALIKGKNPKSPIVELIWKAVAIAKYSEWELESTSRAWELQSLKYEACETAFKQMHILKNSESAEVFDEAHYIKQMEALDAVFRKVSEEDEPTEVPDYLCCKISLDILWDPVITPSGITYERKVILDHIQKVGKFDPVTREELDESQLVPNFAIKEAVEAFQDKHRWAYQTD 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38130207 38132792 + Bma009947.1 Bma13g00876 93605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00876 277 SMART Ubox_2 203 266 IPR003613 GO:0004842|GO:0016567
Bma13g00876 277 Gene3D Tetratricopeptide repeat domain 6 141 IPR011990 GO:0005515
Bma13g00876 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 276 IPR013083 -
Bma13g00876 277 ProSiteProfiles U-box domain profile. 199 273 IPR003613 GO:0004842|GO:0016567
Bma13g00876 277 CDD RING-Ubox_CHIP 200 266 IPR045202 -
Bma13g00876 277 SMART tpr_5 46 78 IPR019734 GO:0005515
Bma13g00876 277 SMART tpr_5 79 112 IPR019734 GO:0005515
Bma13g00876 277 SMART tpr_5 12 45 IPR019734 GO:0005515
Bma13g00876 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 275 IPR045200 GO:0000209|GO:0061630
Bma13g00876 277 SUPERFAMILY TPR-like 11 146 IPR011990 GO:0005515
Bma13g00876 277 Pfam U-box domain 200 272 IPR003613 GO:0004842|GO:0016567
Bma13g00876 277 SUPERFAMILY RING/U-box 192 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00876 Bma-Chr13:38130207 Bma13g00881 Bma-Chr13:38260235 2.89E-161 dispersed
Bma13g00875 Bma-Chr13:38081582 Bma13g00876 Bma-Chr13:38130207 5.98E-119 tandem
Bma13g00876 Bma-Chr13:38130207 Bma13g00877 Bma-Chr13:38148326 1.25E-116 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00876 K09561 - csin:114289567 337.421