Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma13g00877 | GCCCATTATATGCTGGGATTAGCTTTATCAAAGAAAGAAGAATATCCTGAAGGAATCAAGCGTTTAGAGAAGGCATTGGAACTCTTTAAAGGTGAGAACCAGAAGAATCCCATTGTAGAAGACATTTGGAAAGAGCTTGCAAGAGCTAAGTACTCGGAGTGGGAGCTCGCGTCCACATCCAGATCGTGGGAATTACAAAACTTGAAGGAGGCTTGTGAGACAGCTTTTAAGCAAATGCATTTTCTTGAAAATTCTGAGGTTGAAGAAGTCTTTGATGAAGCTCATTTTTCCCATATCAAACAAATGGAGGCTTTAGATGCCGTATTTAGGAAAGTTTCGGAGGCGGATGTGCCGACTGAGGTTCCGGATTATTTATGCTGTAAAATATCACTCGATATTCTCTGGGATCCTGTCATTACTCCTAGCGGTATTACATACGAGAGAGAAGTGATTCTCGACCATATTGAAAAGGTGGGAAAGTTCGATCCGGTGACGAGGGAAGAGCTTGACGAATCGCAGCTTGTGCCAAACTTGGCGATTAAAGAAGCAGTGGAAGCCTTCCAAGACAAACACAGATGGGCATACCAAACAGATTGA | 597 | 42.88 | AHYMLGLALSKKEEYPEGIKRLEKALELFKGENQKNPIVEDIWKELARAKYSEWELASTSRSWELQNLKEACETAFKQMHFLENSEVEEVFDEAHFSHIKQMEALDAVFRKVSEADVPTEVPDYLCCKISLDILWDPVITPSGITYEREVILDHIEKVGKFDPVTREELDESQLVPNLAIKEAVEAFQDKHRWAYQTD | 198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 38148326 | 38149617 | + | Bma009948.1 | Bma13g00877 | 93606 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma13g00877 | 198 | Coils | Coil | 65 | 85 | - | - | |
Bma13g00877 | 198 | ProSiteProfiles | U-box domain profile. | 120 | 194 | IPR003613 | GO:0004842|GO:0016567 | |
Bma13g00877 | 198 | Pfam | U-box domain | 121 | 193 | IPR003613 | GO:0004842|GO:0016567 | |
Bma13g00877 | 198 | SUPERFAMILY | RING/U-box | 114 | 195 | - | - | |
Bma13g00877 | 198 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 197 | IPR013083 | - | |
Bma13g00877 | 198 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 1 | 196 | IPR045200 | GO:0000209|GO:0061630 | |
Bma13g00877 | 198 | SMART | Ubox_2 | 124 | 187 | IPR003613 | GO:0004842|GO:0016567 | |
Bma13g00877 | 198 | CDD | RING-Ubox_CHIP | 121 | 187 | IPR045202 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma13g00877 | Bma-Chr13:38148326 | Bma09g00003 | Bma-Chr9:236508 | 3.18E-12 | dispersed | |
Bma13g00877 | Bma-Chr13:38148326 | Bma13g00881 | Bma-Chr13:38260235 | 1.25E-143 | proximal | |
Bma13g00876 | Bma-Chr13:38130207 | Bma13g00877 | Bma-Chr13:38148326 | 1.25E-116 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma13g00877 | K09561 | - | csv:101215457 | 289.656 |