Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00881 ATGGGGCCGACAGTGCTCGTCGCAGAAGAACAAGCGGCTCAACTGAAAAAGGAAGGCAACATTTGCTTCAAGAAAGGTCGCGTTGGAGCTGCCATAGATGCCTATACCGGGGCAATTACGTTATGCCCAAATGTTCCTGTGTATTGGACGAACAGAGCAGCATGCCATCGCAAGCGGAGTGACTGGAAGAAGATGGAGGAGGACAGCAGGAAAGCTATTGAGGTCAACAAAAGTTATGCCAAGGCCCATTATATGCTGGGATTAGCTTTATCAAAGAAAGAAGAATATCCTGAAGGAATCAAGCATTTAGAGAAGGCGTTGGAACTCTTTAAAGGTGAGAACCAGAGGAATCCCATTGTAGAAGACATTTGGAAAGAGCTTGCAAGAGCAAAGTACTCGGAGTGGGAGCTCGCGTCCACATCCAGATCGTGGGAATTACAAAGCTTGAAGGAGGCTTGTGAGACAGCTTTTAAGCAAATGCATTTTCTTGAAAATTCTGAGGCTGAAGAAGTCTTTGATGAAGCTCATTTTTCCCATATCAAACAAATGGAGGCTTTAGATGCTGTATTTAGGAAAGTTTCGGAGGCGGATGTGCCAACCGAGGTTCCGGATTATTTATGCTGTAAAATATCACTCGATATTCTCTGGGATCCTGTTATCACTCCTAGCGGTATTACATACGAGAGAGAAGTGATTCTCGACCATATTGAAAAGGTGGGAAAGTTCGATCCGGTAACGAGGGAAGAGCTTGACGAATCGCAGCTTGTGCCAAACTTGGCGATTAAAGAAGCAGTGGAAGCCTTCCAAGACAAACACAGATGGGCATACCAGACAGATTGA 840 45.24 MGPTVLVAEEQAAQLKKEGNICFKKGRVGAAIDAYTGAITLCPNVPVYWTNRAACHRKRSDWKKMEEDSRKAIEVNKSYAKAHYMLGLALSKKEEYPEGIKHLEKALELFKGENQRNPIVEDIWKELARAKYSEWELASTSRSWELQSLKEACETAFKQMHFLENSEAEEVFDEAHFSHIKQMEALDAVFRKVSEADVPTEVPDYLCCKISLDILWDPVITPSGITYEREVILDHIEKVGKFDPVTREELDESQLVPNLAIKEAVEAFQDKHRWAYQTD 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38260235 38263925 - Bma009952.1 Bma13g00881 93610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00881 279 SMART Ubox_2 205 268 IPR003613 GO:0004842|GO:0016567
Bma13g00881 279 ProSiteProfiles U-box domain profile. 201 275 IPR003613 GO:0004842|GO:0016567
Bma13g00881 279 CDD RING-Ubox_CHIP 202 268 IPR045202 -
Bma13g00881 279 Coils Coil 146 166 - -
Bma13g00881 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 278 IPR045200 GO:0000209|GO:0061630
Bma13g00881 279 Pfam Tetratricopeptide repeat 80 111 IPR013105 -
Bma13g00881 279 Gene3D Tetratricopeptide repeat domain 6 142 IPR011990 GO:0005515
Bma13g00881 279 Pfam U-box domain 202 274 IPR003613 GO:0004842|GO:0016567
Bma13g00881 279 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Bma13g00881 279 SUPERFAMILY TPR-like 11 132 IPR011990 GO:0005515
Bma13g00881 279 SMART tpr_5 12 45 IPR019734 GO:0005515
Bma13g00881 279 SMART tpr_5 80 113 IPR019734 GO:0005515
Bma13g00881 279 SMART tpr_5 46 79 IPR019734 GO:0005515
Bma13g00881 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 278 IPR013083 -
Bma13g00881 279 SUPERFAMILY RING/U-box 195 276 - -
Bma13g00881 279 PANTHER OS08G0113300 PROTEIN 8 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00429 Bma-Chr10:4554068 Bma13g00881 Bma-Chr13:38260235 5.07E-159 dispersed
Bma13g00874 Bma-Chr13:38014965 Bma13g00881 Bma-Chr13:38260235 1.50E-129 dispersed
Bma13g00875 Bma-Chr13:38081582 Bma13g00881 Bma-Chr13:38260235 1.35E-139 dispersed
Bma13g00876 Bma-Chr13:38130207 Bma13g00881 Bma-Chr13:38260235 2.89E-161 dispersed
Bma13g00881 Bma-Chr13:38260235 Bma09g00003 Bma-Chr9:236508 4.64E-12 dispersed
Bma13g00877 Bma-Chr13:38148326 Bma13g00881 Bma-Chr13:38260235 1.25E-143 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00881 K09561 - csv:101215457 393.66