Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00886 ATGGAGCGCGATGCCGGAATTCCTTCGGCCAGAGTGGCAGTGACGGAGGGGCAGTCCTCGGCTCTGTCGCCGTCGTTGAGCGAAGATGCATTGTGGCAAATGAACTCGAGATCAAGTGAAACAATGGAAGGCGGGCCATATCCTGAGCGTCAAGGAGAGCCAGATTGTTCTTATTACATCAGAACCGGCATATGTAGATTCGGAGCAACATGCCGTTTTAATCATCCTCCAGACAGAAAGCTGGCTATTGCCACTGCAAGGATGAAGGGGGAATATCCTGAGAGAATCGGACAGCCGGAATGTCAGTACTACCTGAAGACTGGAACCTGCAAGTTTGGAGCAACATGCAAGTTTCATCATCCTAGAGACAAAGCTGGGATTGCTGGAAGAGTTTCCTTAAATATTTTAGGATATCCGCTTCGCCCGAACGAGATTGAATGTGGTTATTATTTAAGAACTGGGACTTGCAAATTCGCAAGTATGTGTAAATTCCATCACCCTCAACCGTCTAATATGATGGTTCCCTTACGCGGTTCTCCTGTTTATCCGACCGTCCAGTCTCCAACTACTAGTCCACAATCGTATCAAGGAGATATTACAAATTGGTCAAGAGCGTCTTTTATTCCAAGTCCAAGATGGCAAGGCCCCTCTAGTTATGCGCCCGTTATTCTACCGCAAGGACTAGTTTCCGTTCAAGGTTGGAATGCATACAGTGGTCCTCTGGGATCGGTTTCTTCTTCAGAGAGTCAGCAACAAACATCGACAATTAGTCAGGTTTACGGAGCTTCATGTCAAAACGAATCTGGTAGTACAGTCCATGAAATACCGTTTTCTTCATTCCGTTCAGGCTCTGTCCATGTTGGGTACTATGCATTGCAGAGGGACAATGTATTTCCCGAGCGACCTGGTGAGCCTGAGTGTCGGTTTTACATGAAAACTGGTGATTGCAAATTTGGCTTGGTCTGTCAATTCCACCATCCTAGAGAGAGACTACTACCGGCTCCAGACTGTGTTTTGAGCCCCATCGGCCTTCCCTTACGTCCGGGAGAACCTTTATGCCTCTTCTATTCTCGTTATGGTATCTGCAAGTTCGGTCCAAGCTGCAAATTCGACCACCCGATGAGAATCTTCTCATACAATTTCGCCGCATCACAGTCTTCGGATTTCTCAGTTCGTCGTTTATTGGGTTCATCGTCGGGAACATCAGCCCTAAATTTGTCCCCAGAAGGACTGATTGAAGCAGGTTCTACAAAGCCGAGGAGGCTCTCACTATCAGAAAGTAGACAGATGTCTTCTAATGGCGACAATATTGACATAGCCGAATGA 1326 47.06 MERDAGIPSARVAVTEGQSSALSPSLSEDALWQMNSRSSETMEGGPYPERQGEPDCSYYIRTGICRFGATCRFNHPPDRKLAIATARMKGEYPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVSLNILGYPLRPNEIECGYYLRTGTCKFASMCKFHHPQPSNMMVPLRGSPVYPTVQSPTTSPQSYQGDITNWSRASFIPSPRWQGPSSYAPVILPQGLVSVQGWNAYSGPLGSVSSSESQQQTSTISQVYGASCQNESGSTVHEIPFSSFRSGSVHVGYYALQRDNVFPERPGEPECRFYMKTGDCKFGLVCQFHHPRERLLPAPDCVLSPIGLPLRPGEPLCLFYSRYGICKFGPSCKFDHPMRIFSYNFAASQSSDFSVRRLLGSSSGTSALNLSPEGLIEAGSTKPRRLSLSESRQMSSNGDNIDIAE 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38733740 38736960 - Bma009959.1 Bma13g00886 93615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00886 441 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Bma13g00886 441 PANTHER PROTEIN PHOSPHATASE RELATED 13 439 - -
Bma13g00886 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 374 IPR000571 GO:0046872
Bma13g00886 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Bma13g00886 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 146 168 IPR000571 GO:0046872
Bma13g00886 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 77 IPR000571 GO:0046872
Bma13g00886 441 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 328 IPR000571 GO:0046872
Bma13g00886 441 Gene3D - 300 386 - -
Bma13g00886 441 Gene3D - 48 125 - -
Bma13g00886 441 ProSiteProfiles Zinc finger C3H1-type profile. 301 329 IPR000571 GO:0046872
Bma13g00886 441 SUPERFAMILY CCCH zinc finger 305 331 IPR036855 GO:0046872
Bma13g00886 441 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 13 439 - -
Bma13g00886 441 SUPERFAMILY CCCH zinc finger 144 169 IPR036855 GO:0046872
Bma13g00886 441 Gene3D - 126 174 - -
Bma13g00886 441 MobiDBLite consensus disorder prediction 416 441 - -
Bma13g00886 441 MobiDBLite consensus disorder prediction 420 441 - -
Bma13g00886 441 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Bma13g00886 441 MobiDBLite consensus disorder prediction 1 26 - -
Bma13g00886 441 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Bma13g00886 441 SUPERFAMILY CCCH zinc finger 350 374 IPR036855 GO:0046872
Bma13g00886 441 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Bma13g00886 441 SUPERFAMILY CCCH zinc finger 55 78 IPR036855 GO:0046872
Bma13g00886 441 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Bma13g00886 441 SMART c3hfinal6 301 328 IPR000571 GO:0046872
Bma13g00886 441 SMART c3hfinal6 347 374 IPR000571 GO:0046872
Bma13g00886 441 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Bma13g00886 441 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Bma13g00886 441 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01306 Bma-Chr3:25703496 Bma13g00886 Bma-Chr13:38733740 2.68E-15 dispersed
Bma08g00542 Bma-Chr8:32506086 Bma13g00886 Bma-Chr13:38733740 2.87E-88 dispersed
Bma13g00886 Bma-Chr13:38733740 Bma14g01187 Bma-Chr14:17621737 0 dispersed
Bma13g00323 Bma-Chr13:5812458 Bma13g00886 Bma-Chr13:38733740 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58251 PF00642 zf-CCCH 1.60E-09 CL0537 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00886 - - qsu:112012560 716.072