Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00898 TGTCGATCTGATGAAAATTATGACATTCCAGGTCGGTCCATGCTTGGATTTTCACTTACATCTCCTGAATTGGTGGTCTGTGCTGGTTCTCCAGAAATTCCTGGAGTTAGTTACATTGATTCTCCAGAGTTAATGAATGTCAAACGTAACAAAGAAATTGAATCTTCTGTGGAGCTCTCTTTTGAAAATAGCTTCCATGAAAGCGAAAGAAAATTTTCAAAAAGAACCCCATCCGTCAAATTTGCTGCATTCTCTCAAATTGTTGAAGAAGATCTTTCTCCAGAATCTTCCTTTGAGCTACCTCAGCCTCCAGAGGCTGAAGATACAACACCAAAAAATCATCTTCCGGTTATAAGCATCAATGTAGGGTCCTCAAATGGTGCAGTGACTTTAGATGGGGTCAATTACTTGGAAGACAATTGGTATGCAGGTGAGTATCAAATGCTCCAAAAAAGGTATAAGCTTCAGAATCGTGAGCTATCAGAGGCAAGAAAGAAAATGGACGAATTGAAGAAGGAAAACCAGCAGAAGAGCAGAGAATGTCAAGAAGCTTGGAAGTCTTTGCAAGAGCTCCAGAATGAACTCATGCGTAAATCAATGCACGTCGGATCTTTGGCTTTTGCCATTGAGGGACAAGTGAAAGAGAAGGGCAAGTGGTTTTCCTCACTGAGAGACCTGACAAGAAAGCTGAAGATTATGAAAATGGAACACATTAAGCTATCGGAGGAGGTTTTGGGATATAAGAAATCCCTCACTGATATAAATGAATTGGCATCTACCATTCAAACTGCATTCAATCAGCAAGTAGACGTGTATGGGGATCTAAAGACCAAGTTCATTGAAGGGATCAAGGAAAAGAAAGAGCTTTATAACAAGATCTTGGAGACAAAAGGAAATATTAGGGTCTTCTGTCGATGTAGGCCTCTAAATACAGAAGAAATTGCAAATGGAGCTTCAATGTCGTTTGATTTTGAATCAGCAAAAGACGGTGAGCTCAGTGTAAAGTCCAATGGGGTCCCCAAAAGAATTTATAAGTTTGACGCAGTGTTTGGTCCCCTAGCAAGTCAAGATGATGTTTTTGAAGATACAGCTCCATTTGCAATTTCTGTTTTAGACGGATACAACGTGTGCATATTTGCTTATGGACAAACTGGAACGGGAAAAACGTTTACAATGGAGGGTTCAAAAGATGCTCGTGGTGTCAATTTTAGGACTCTTGAGGAACTGTTTAGCCTAATCAAGGAAAGAGAAAAACTATACAGATATAGTGTATCTGTGTCTGTCTTGGAAGTGTATAATGAGCAAATTCGAGACTTGATAGTTTCAGGAGGATCTCAGTCAGGAGTAGCAACAAAACGACTTGAAGTAAGGCAAGTGAGCGAAGGAATACATCATGTTCCAGGCCTTGTTGAGGCGCCGGTGAATAACATGAGTGAAGTTTGGGAAGTTCTACAAACCGGCAGCAATGCAAGAGCAGTGAGCTCGACAAATGCCAACGAATATAGCAGCCGATCCCATTGCATGCACTGTGTGATGGTAAAAGGCGAGAATTTGCTTGATGGGGAATGCACAAGTAGCAAACTATGGTTGGTAGATTTAGCAGGAAGCGAACGAATAGCCAAGACAGAGGTACTAGGTGATCGCCTTAAGGAAACCCAAAATATTAACAGGTCTCTCTCTGCACTTGGTGATGTCATATCTTCCCTCGCTACCAAAAGTCCACACATCCCTTTCAGGAATTCAAAGCTTACACATTTGCTTCAAGACTCCCTAGGGGGAGATTCAAAGACACTCATGTTTGTTCAAATCAGTCCGAACGCTGAGAGAACCAAGCTAGATATTAAGTGTAAAGATGTTCAAATCAGGAAGATGGAGGAAACAATTCATGGTTTTGAATTAAAGGTGAAGGAAAAGGATCTTAAAAACAAGAACTTACAAGACAAGATAAAAGAATTGGAATCACAACTTTTGATCGAAAGAAAGCTAGCACGTCAACATGTAGACACGAAGATTGCCGAGCAACAACAGCAGATAAAAAATCAGGTGCAAGAAGAAACCATTGGACCTCTCAGACCAAGAATTGCCAACAGACAATTAGGAGGCAACAAAAACATCACTGAACAACTGAACTTTGCAAAGGAGCATGGGAGTTTGTCTAATCCTTTATTGGATAATAACAACAGCTTCAAACCTTCATGTCCTCTTCCTCCAACCGATGGATTTGTCAAGTACATCGATTCAGAAGAGAAGGAGAACATTCCCGAAATAACCAACCGACCTCTACTTCCGAAGCGATCCGGAAGAGTCTCTATTTGCACGGTTTCTCGCCACCTTCCATCAGCTGTGGCTCCGGCTCTGGCTCCGGCTCCGGCTCCGGCTCCAAGAAGATACTCTTTGATCCCACTCCCAAGTGCACTAAAATTTAAGCTTCCACCACTTGTGCCATTGCCATTACTTGAAGCTGACCAGAAAGAAGAAACAGATGGGTCAGATAACTGGCTGCCTGAAAATATACCTTGTGAAAGTCCTAAAGTCCAAAAGTATGGAGGAAAGAACCTGAGCAGCATATTGAGAAGAAGCCTCCAAAGGAAGATTAAAAAGTCTCCCATGCAGCAACACATGAAGAAAGGTGGCATCAACTTGGGAACGGAAAAGGTGAGAGTGTCCATCGGAAGCCGAGGGCGGCTTGGGCTAGCCCACCGAGCTTTTTTGGTCAACGGGAGAAGAGGAAACAAAGAAGCACAACAGAGTAAGCAGATTCAAAAAGAGAAGGAGAGGGGATGGAATATCGGAAGAAACCTGATGTAA 2808 42.2 CRSDENYDIPGRSMLGFSLTSPELVVCAGSPEIPGVSYIDSPELMNVKRNKEIESSVELSFENSFHESERKFSKRTPSVKFAAFSQIVEEDLSPESSFELPQPPEAEDTTPKNHLPVISINVGSSNGAVTLDGVNYLEDNWYAGEYQMLQKRYKLQNRELSEARKKMDELKKENQQKSRECQEAWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKGKWFSSLRDLTRKLKIMKMEHIKLSEEVLGYKKSLTDINELASTIQTAFNQQVDVYGDLKTKFIEGIKEKKELYNKILETKGNIRVFCRCRPLNTEEIANGASMSFDFESAKDGELSVKSNGVPKRIYKFDAVFGPLASQDDVFEDTAPFAISVLDGYNVCIFAYGQTGTGKTFTMEGSKDARGVNFRTLEELFSLIKEREKLYRYSVSVSVLEVYNEQIRDLIVSGGSQSGVATKRLEVRQVSEGIHHVPGLVEAPVNNMSEVWEVLQTGSNARAVSSTNANEYSSRSHCMHCVMVKGENLLDGECTSSKLWLVDLAGSERIAKTEVLGDRLKETQNINRSLSALGDVISSLATKSPHIPFRNSKLTHLLQDSLGGDSKTLMFVQISPNAERTKLDIKCKDVQIRKMEETIHGFELKVKEKDLKNKNLQDKIKELESQLLIERKLARQHVDTKIAEQQQQIKNQVQEETIGPLRPRIANRQLGGNKNITEQLNFAKEHGSLSNPLLDNNNSFKPSCPLPPTDGFVKYIDSEEKENIPEITNRPLLPKRSGRVSICTVSRHLPSAVAPALAPAPAPAPRRYSLIPLPSALKFKLPPLVPLPLLEADQKEETDGSDNWLPENIPCESPKVQKYGGKNLSSILRRSLQRKIKKSPMQQHMKKGGINLGTEKVRVSIGSRGRLGLAHRAFLVNGRRGNKEAQQSKQIQKEKERGWNIGRNLM 935
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 38978531 38984378 + Bma009972.2 Bma13g00898 93627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00898 935 Coils Coil 635 662 - -
Bma13g00898 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 607 IPR027417 -
Bma13g00898 935 Coils Coil 223 243 - -
Bma13g00898 935 Pfam Kinesin motor domain 305 609 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma13g00898 935 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 145 606 - -
Bma13g00898 935 MobiDBLite consensus disorder prediction 915 929 - -
Bma13g00898 935 ProSitePatterns Kinesin motor domain signature. 526 537 IPR019821 GO:0003777|GO:0005524|GO:0007018
Bma13g00898 935 ProSiteProfiles Kinesin motor domain profile. 299 640 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma13g00898 935 PANTHER KINESIN-LIKE PROTEIN KLP-3 19 146 - -
Bma13g00898 935 SMART kinesin_4 297 622 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma13g00898 935 PANTHER KINESIN-LIKE PROTEIN KLP-3 607 919 - -
Bma13g00898 935 Coils Coil 146 194 - -
Bma13g00898 935 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 607 919 - -
Bma13g00898 935 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 19 146 - -
Bma13g00898 935 MobiDBLite consensus disorder prediction 92 112 - -
Bma13g00898 935 Gene3D Kinesin motor domain 243 614 IPR036961 -
Bma13g00898 935 PRINTS Kinesin heavy chain signature 496 513 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma13g00898 935 PRINTS Kinesin heavy chain signature 527 545 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma13g00898 935 PRINTS Kinesin heavy chain signature 576 597 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma13g00898 935 PRINTS Kinesin heavy chain signature 373 394 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Bma13g00898 935 PANTHER KINESIN-LIKE PROTEIN KLP-3 145 606 - -
Bma13g00898 935 MobiDBLite consensus disorder prediction 909 935 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00898 K10406 KIFC2_3; kinesin family member C2/C3 - jre:108985355 1147.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma09g00143 Bma-Chr9:4891024 Bma13g00898 Bma-Chr13:38978531 7.25E-164 dispersed
Bma13g00898 Bma-Chr13:38978531 Bma14g01337 Bma-Chr14:24762822 7.43E-132 dispersed
Bma13g00898 Bma-Chr13:38978531 Bma15g01077 Bma-Chr15:43103228 6.15E-167 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00898 Bma_Chr13 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0