Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00905 ATGGCTGCGGTTGCTGATGTGCGGGGCGAGGAAGTGGGTTCGAAAAATTTCGACCCGAAATCGAAACCTGTATCGGAGTTCGATATGGAAAAGCTCGTTGATTTGTTTAGCAAATTGAATCCTTCGGCTAAAGAATTTTTCCCGGCTTACGCTCATCTTGATCAACATCATCCTGGCTATTTTTATCATGATCATCAATTTTTTGATAACTATTTGGCATTCGCCGATAACAACTGGGTCGACGATAATCCCAACAATCGAAGGAGAAGAAATACATCTAACCAAGGGAGGAGAAGAATGAATGGGCGAAGTTTTAGAGCCCAACGTGAAGATAGTGTTAGACGAACTGTTTATGTGTCCGACATTGACCAACAAGTAACTGAAGAACGGCTTGCTGCCTTATTCAGCAATTGTGGCCAAGTAATTGACTGCCGGATTTGTGGCGATCCACATTCAGTTCTTCGTTTTGCCTTTGTGGAGTTTTCTGATGAGTATGGTGCTAGAGCAGCTTTAAATCTTGGTGGGACAATGCTAGGCTACTATCCAGTTCGAGTTTTGCCTTCAAAAACTGCCATCCTTCCTGTTAATCCTTCATTTCTCCCCAGGTCAGATGATGAACGGGAAATGTGTACCAGAACCATCTATTGTACAAATATTGATAAGAAGGTATCTCAGACAGAAGTTAAAAACTTTTTTGAAGCAGCTTGTGGTGAGGTCACTCGCTTGAGGCTGTTGGGTGATCAGGTGCATTCTACTCGAATAGCTTTTGTGGAATTTACAATGGCTGAAAGCGCTATTCTTGCACTCAACTGCAGCGGGTTGGTATTGGGATCCCAACCAATTCGGGTAAGTCCGTCGAAGACTCCTGTGAGGCCACGCATTGCTCGTCCGGCATTAACTGTTATATCATAG 912 43.75 MAAVADVRGEEVGSKNFDPKSKPVSEFDMEKLVDLFSKLNPSAKEFFPAYAHLDQHHPGYFYHDHQFFDNYLAFADNNWVDDNPNNRRRRNTSNQGRRRMNGRSFRAQREDSVRRTVYVSDIDQQVTEERLAALFSNCGQVIDCRICGDPHSVLRFAFVEFSDEYGARAALNLGGTMLGYYPVRVLPSKTAILPVNPSFLPRSDDEREMCTRTIYCTNIDKKVSQTEVKNFFEAACGEVTRLRLLGDQVHSTRIAFVEFTMAESAILALNCSGLVLGSQPIRVSPSKTPVRPRIARPALTVIS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39338556 39343039 - Bma009981.1 Bma13g00905 93634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00905 303 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 298 - -
Bma13g00905 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 190 IPR000504 GO:0003723
Bma13g00905 303 SUPERFAMILY RNA-binding domain, RBD 68 188 IPR035979 GO:0003676
Bma13g00905 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 179 IPR000504 GO:0003723
Bma13g00905 303 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 281 IPR000504 GO:0003723
Bma13g00905 303 CDD RRM2_CID8_like 208 289 IPR034825 -
Bma13g00905 303 Gene3D - 199 293 IPR012677 -
Bma13g00905 303 Gene3D - 75 191 IPR012677 -
Bma13g00905 303 SMART rrm1_1 213 284 IPR000504 GO:0003723
Bma13g00905 303 SMART rrm1_1 116 186 IPR000504 GO:0003723
Bma13g00905 303 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 288 IPR000504 GO:0003723
Bma13g00905 303 MobiDBLite consensus disorder prediction 82 106 - -
Bma13g00905 303 Pfam Ataxin-2 C-terminal region 35 48 IPR009818 -
Bma13g00905 303 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 298 - -
Bma13g00905 303 CDD RRM1_CID8_like 113 192 IPR034823 -
Bma13g00905 303 SUPERFAMILY RNA-binding domain, RBD 201 294 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00905 - - - jre:108994422 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g01318 Bma-Chr10:46822952 Bma13g00905 Bma-Chr13:39338556 1.06E-125 dispersed
Bma13g00905 Bma-Chr13:39338556 Bma14g02028 Bma-Chr14:43597061 2.58E-124 dispersed
Bma02g01193 Bma-Chr2:54032224 Bma13g00905 Bma-Chr13:39338556 5.84E-08 transposed
Bma06g01273 Bma-Chr6:49814697 Bma13g00905 Bma-Chr13:39338556 2.77E-08 transposed
Bma10g00454 Bma-Chr10:5118270 Bma13g00905 Bma-Chr13:39338556 6.60E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g910 . . . . . . . Bma13g00905 Cmo16g00493 Cmo04g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00770 Blo07g00996 . Bda05g00815 Bda12g00790 . . . . . . . Cma04g00645 Cma16g00458 Car04g00600 Car16g00416 Cpe14g00386 Cpe01g00582 . . . . . . . Cla07g01001 Cam07g1077 Cec07g1149 Cco07g1127 Clacu07g1051 Cmu07g1042 Cre07g1417 . . Chy07g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00905 Bma_Chr13 FPKM 29.030647 31.816296 0.403615 0.118001 1.664813 1.416615 1.136457 0.267949 0.151385 0.32618