Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00908 ATGGCCTTACAATTGCAAATGAGTTGGCAGCCGAGTTTACTGAGTCAGAAGAGGAAGAACAGCGCCCCACTCGGTTTGAGAAACCTCGGGAACACCTGCTATCTCAACAGCGTTCTTCAGTGCCTTACTTACACCCCTCCCCTCGCCGATTTCTGCCTCCGGAATCAGCACTCGTCGCTGTGCGATTATGCTTCTTCTGATTCGGAGCGAAAGCGCGACTGTCCTTTTTGCATACTGGAGAGGCGGATAGTTCGGTCTTTGAGCGCGGATCTCACTTTGGATGCTCCTCTTAAGATCCAGAACTGTCTGAAGATCTTTGCTGAGCATTTTCGATTGGGACGTCAGGAGGACGCTCATGAGTTTCTTCGCTATGTCATTGATGCTTGCCATAACACTTGTCTTCGCTTGAAGAAGCCTAGACGGAATGACAGCTCTTGTGGAATTGGCGGTGCCTCTGTTGTGAAGGATATATTTGGAGGTTCTTTGCAGAGCCAGGTGAAGTGTTCATCATGTGGCAACGATTCCAATAAGATTGACGAGATGATGGATATAAGTCTTGATATTTTGCATAGTAATTCACTTAAGGAGTCCTTGCATAAGTTCTTTCTGCCTGAGGTTTTGGATGGCACCAACAAGTATAAGTGCGACAATTGCGATAAGTTGGTGACAGCGAGAAAGCAAATGTCAATATTTCAAGCTCCCAATGTACTTGTAATTCAATTAAAGAGATTCGAGGGCATATTTGGCGGGAAGATTGATAAAGCCATCGCCTTTGAAGAGGCTTTGCTGCTTTCTAGTTTCATGTGCAAAACAAGTCAGGATCCACAACCAGAATACAAGCTCTTCGGTACTATTGTGCATTCAGGATTCTCGCCAGAGTCTGGACATTACTACGCATATATCAAGGATGCCATGGATAGATGGTTTTGCTGCAATGACTCGTATGTTTCCGTTTCAAGCCTGCAGGAGGTCTTGTCAGAAAAGGCTTATATTCTTTTCTTTTCTAGAACTAACCAAAGACCACTATCTTCAAGTACTTTCCTCGCTTCCAATGGTGTAAAATCTCATGCTGGTAATGGATGTGAAGCTGTGAAAAACCCAAAAATTGCACCTCTGGTAAATGGAAAATCCAATGGTGTACAACATTCGCGGAAGGACCTTGATATTTCTTCCAAGGTTGACAAACTGCCTTCTTGCCCTCAGATGAAATTTAATATAGTTGGAAAGTCTAGTCCCAGAATATCTACAGCCACTGTTAATGGAAAGGTTGCTGTTTCTACAAATCATGGCACTACTGTGAATGTGAATGAGAAGCACAGGTTTCATGTAGTGCCAAATTCGAATGATAAGTTGTTCCTAACAAATGGACATGGTGTTATTAGCGAAAAAAAGGTTGATGGAGTTCACAGAGAGGGTGGTAAAACATCTGTCTTAATGAATGGAAATGGTAAGGCTTCAATGAAGTCAGAATATGATGTCAGTAATGATATGAGTAACAAGTTGACTGCAAAAAAGCTTAACCATGAAGTGCATACTGGGGGAGTTGACTGCCATTTGGAGGTCAAGGGATCCAAAAGAAAATTGTCGGAGAGCTCTTGTATTTTGCTTCGACAAGACGCTCAATCGCGGGCAAAGGTTGAAGAATTGAAGGAAGAGTATGTTATTCCTGAACTACTTCTAAAATTTCCAAATATAGTGTTTATTTTCAACCACTGCTTTGTAGCTACTTATTGA 1734 42.5 MALQLQMSWQPSLLSQKRKNSAPLGLRNLGNTCYLNSVLQCLTYTPPLADFCLRNQHSSLCDYASSDSERKRDCPFCILERRIVRSLSADLTLDAPLKIQNCLKIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKPRRNDSSCGIGGASVVKDIFGGSLQSQVKCSSCGNDSNKIDEMMDISLDILHSNSLKESLHKFFLPEVLDGTNKYKCDNCDKLVTARKQMSIFQAPNVLVIQLKRFEGIFGGKIDKAIAFEEALLLSSFMCKTSQDPQPEYKLFGTIVHSGFSPESGHYYAYIKDAMDRWFCCNDSYVSVSSLQEVLSEKAYILFFSRTNQRPLSSSTFLASNGVKSHAGNGCEAVKNPKIAPLVNGKSNGVQHSRKDLDISSKVDKLPSCPQMKFNIVGKSSPRISTATVNGKVAVSTNHGTTVNVNEKHRFHVVPNSNDKLFLTNGHGVISEKKVDGVHREGGKTSVLMNGNGKASMKSEYDVSNDMSNKLTAKKLNHEVHTGGVDCHLEVKGSKRKLSESSCILLRQDAQSRAKVEELKEEYVIPELLLKFPNIVFIFNHCFVATY 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39453922 39458595 + Bma009984.1 Bma13g00908 93637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00908 577 Pfam Ubiquitin carboxyl-terminal hydrolase 25 334 IPR001394 GO:0004843|GO:0016579
Bma13g00908 577 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 15 377 - -
Bma13g00908 577 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 377 - -
Bma13g00908 577 CDD Peptidase_C19E 23 335 - -
Bma13g00908 577 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 279 297 IPR018200 GO:0004843|GO:0006511
Bma13g00908 577 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Bma13g00908 577 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 337 IPR028889 -
Bma13g00908 577 SUPERFAMILY Cysteine proteinases 18 336 IPR038765 -
Bma13g00908 577 Gene3D Cysteine proteinases 17 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00908 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101218797 681.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00908 Bma-Chr13:39453922 Bma15g01048 Bma-Chr15:42143707 5.75E-23 dispersed
Bma02g00109 Bma-Chr2:992800 Bma13g00908 Bma-Chr13:39453922 2.80E-09 transposed
Bma03g00442 Bma-Chr3:3364983 Bma13g00908 Bma-Chr13:39453922 8.40E-26 transposed
Bma03g01009 Bma-Chr3:11155422 Bma13g00908 Bma-Chr13:39453922 1.34E-29 transposed
Bma04g01145 Bma-Chr4:29023505 Bma13g00908 Bma-Chr13:39453922 3.72E-12 transposed
Bma14g00154 Bma-Chr14:2138480 Bma13g00908 Bma-Chr13:39453922 2.38E-50 transposed
Bma10g00469 Bma-Chr10:5319147 Bma13g00908 Bma-Chr13:39453922 4.24E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g901 . . . . . . . Bma13g00908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00908 Bma_Chr13 FPKM 5.04982 5.217667 3.873219 4.228855 10.267735 10.627854 10.156532 4.564363 4.657023 4.996284