Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00909 ATGGCGGATGAGGTGGTTCTTTTGGATTTCTGGCCGAGCCCTTTTGGGATGAGGTTGAGGATCGCTTTGGCTGAGAAGGGGATCAAGTATGAGTACAAGGAGGAGGATTTGAGGAACAAGAGCCCTCTTCTTCTTCAGATGAACCCGATTCACAAGAAGATTCCGGTTCTCATTCACAATGGCAAGTCTGTTTGTGAATCCCTGATTGCTGTCCAGTATATTGACGAGGTTTGGCCGGAGAAGTCTCCATTGCTTCCGGCGGATCCTTTTCTCAGATCTCAGGCCAGGTTCTGGGCTGACTATGTCGACAAGAAGGCATTGTTTGAAGTGATAATAAGCAGTTCGATGTGGGTGTATGAGAATGAACAGATTTACGAGCTAGGGAGGAAGCTATGGTCGACAAAAGGAGAAGAACATGAAACGGCAAAGGCGGAATATCTGGAGTGCTTGAAGACGCTTGAAACTGAGCTAGGAGACAAACCCTTCTTCGGAGGGGAGTGTTTTGGATACGTCGATGTGGTGTTCATTCCGTTCTCTACGTGGTTTTTGGCTTACGAGACGCACGGGAAGTTCACGACGGAGGAAGAATGTCCTAAACTCATGGCTTGGGTCAAGAGATGCTTGGAGAAAGAGAGTGTTTCAAAGTCTCTTCCTGAGCAGGAGAAGGTCCTTGGCTTTGTTTCCCATTTGAAAAAGGTATTTGGGATAGAGTAG 714 47.34 MADEVVLLDFWPSPFGMRLRIALAEKGIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKSVCESLIAVQYIDEVWPEKSPLLPADPFLRSQARFWADYVDKKALFEVIISSSMWVYENEQIYELGRKLWSTKGEEHETAKAEYLECLKTLETELGDKPFFGGECFGYVDVVFIPFSTWFLAYETHGKFTTEEECPKLMAWVKRCLEKESVSKSLPEQEKVLGFVSHLKKVFGIE 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39463942 39465168 + Bma009985.2 Bma13g00909 93638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00909 237 SFLD Glutathione Transferase (cytosolic) 6 209 IPR040079 -
Bma13g00909 237 SUPERFAMILY GST C-terminal domain-like 76 233 IPR036282 -
Bma13g00909 237 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
Bma13g00909 237 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 4 106 - -
Bma13g00909 237 Pfam Glutathione S-transferase, C-terminal domain 142 206 - -
Bma13g00909 237 CDD GST_N_Tau 5 78 - -
Bma13g00909 237 Gene3D Glutaredoxin 1 87 - -
Bma13g00909 237 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 106 IPR045073 -
Bma13g00909 237 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 114 230 IPR045073 -
Bma13g00909 237 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Bma13g00909 237 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 114 230 - -
Bma13g00909 237 Pfam Glutathione S-transferase, N-terminal domain 6 76 IPR004045 -
Bma13g00909 237 CDD GST_C_Tau 89 230 IPR045074 GO:0004364|GO:0006749
Bma13g00909 237 Gene3D - 88 237 - -
Bma13g00909 237 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 226 IPR010987 -
Bma13g00909 237 SFLD Main (cytGST) 6 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00909 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - tcc:18594547 354.369
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00909 Bma-Chr13:39463942 Bma08g00281 Bma-Chr8:3817640 2.98E-46 dispersed
Bma13g00909 Bma-Chr13:39463942 Bma13g00910 Bma-Chr13:39481538 1.82E-128 tandem
Bma05g01266 Bma-Chr5:52026871 Bma13g00909 Bma-Chr13:39463942 3.94E-50 transposed
Bma10g00468 Bma-Chr10:5316980 Bma13g00909 Bma-Chr13:39463942 1.58E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g865 . . . . . . . Bma13g00909 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda12g00804 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma10g01002 . 1 205 Glutathione S-transferase Gene Family AT2G02930 50.2 1.1e-52 203.4
Bma13g00392 . 1 220 Glutathione S-transferase Gene Family AT2G47730 51.1 1.2e-56 216.9
Bma10g01002 . 1 208 Glutathione S-transferase Gene Family AT2G47730 51.9 1.6e-56 216.5
Bma14g01123 . 1 212 Glutathione S-transferase Gene Family AT3G03190 59.4 5.7e-73 270.8
Bma14g01123 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.8 2.0e-73 272.3
Bma01g01846 . 3 216 Glutathione S-transferase Gene Family AT3G09270 55.3 4.0e-69 258.1
Bma01g01843 . 3 189 Glutathione S-transferase Gene Family AT3G09270 57.4 6.4e-59 224.2
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78380 63.7 4.6e-86 314.3
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G78380 65.1 1.8e-82 302.4
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78380 63.6 2.0e-81 298.9
Bma13g00909 . 1 232 Glutathione S-transferase Gene Family AT1G78370 58.6 9.2e-79 290.0
Bma13g00910 . 1 212 Glutathione S-transferase Gene Family AT1G78370 61.3 3.9e-77 284.6
Bma10g00468 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.2 1.9e-76 282.3
Bma13g00909 . 1 234 Glutathione S-transferase Gene Family AT1G78340 59.0 9.9e-81 296.6
Bma13g00910 . 1 211 Glutathione S-transferase Gene Family AT1G78340 63.0 2.9e-80 295.0
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78340 60.7 4.6e-78 287.7
Bma10g00468 . 1 212 Glutathione S-transferase Gene Family AT1G78320 51.4 1.0e-57 219.9
Bma13g00910 . 1 205 Glutathione S-transferase Gene Family AT1G78320 53.2 2.3e-57 218.8
Bma13g00909 . 1 237 Glutathione S-transferase Gene Family AT1G17180 60.8 4.6e-86 314.3
Bma10g00468 . 1 217 Glutathione S-transferase Gene Family AT1G17180 63.5 4.3e-84 307.8
Bma13g00910 . 1 209 Glutathione S-transferase Gene Family AT1G17180 63.6 8.2e-83 303.5
Bma13g00909 . 3 235 Glutathione S-transferase Gene Family AT1G17190 54.5 2.4e-74 275.4
Bma13g00910 . 3 209 Glutathione S-transferase Gene Family AT1G17190 57.5 3.2e-71 265.0
Bma10g00468 . 3 215 Glutathione S-transferase Gene Family AT1G17190 55.8 4.2e-71 264.6
Bma13g00910 . 3 215 Glutathione S-transferase Gene Family AT3G43800 51.6 2.4e-61 232.3
Bma13g00909 . 4 237 Glutathione S-transferase Gene Family AT1G53680 54.0 1.8e-69 259.2
Bma13g00910 . 4 216 Glutathione S-transferase Gene Family AT1G53680 57.8 6.8e-69 257.3
Bma10g00468 . 4 217 Glutathione S-transferase Gene Family AT1G53680 53.2 3.7e-67 251.5
Bma14g01714 . 53 220 Glutathione S-transferase Gene Family AT2G02390 58.3 6.7e-57 217.2
Bma06g01222 . 58 224 Glutathione S-transferase Gene Family AT2G02390 53.3 4.4e-48 188.0
Bma14g01714 . 11 223 Glutathione S-transferase Gene Family AT2G02380 61.0 5.9e-73 270.8
Bma06g01222 . 15 223 Glutathione S-transferase Gene Family AT2G02380 54.1 1.0e-61 233.4
Bma05g00815 . 1 244 Glutathione S-transferase Gene Family AT5G41210 68.9 4.9e-97 350.9
Bma05g00815 . 1 250 Glutathione S-transferase Gene Family AT5G41240 66.8 5.5e-94 342.0
Bma10g00017 . 10 226 Glutathione S-transferase Gene Family AT5G02780 64.8 2.9e-78 288.5
Bma10g00017 . 8 231 Glutathione S-transferase Gene Family AT3G55040 58.2 8.3e-75 277.3
Bma10g00017 . 7 227 Glutathione S-transferase Gene Family AT5G02790 66.2 7.9e-84 307.0
Bma03g00309 . 1 237 Glutathione S-transferase Gene Family AT1G19570 60.5 1.8e-79 292.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G19570 57.9 4.5e-70 261.2
Bma08g01128 . 1 241 Glutathione S-transferase Gene Family AT1G19570 51.7 4.2e-68 254.6
Bma03g00309 . 1 238 Glutathione S-transferase Gene Family AT1G75270 61.5 9.6e-81 296.6
Bma08g01128 . 1 209 Glutathione S-transferase Gene Family AT1G75270 63.8 7.4e-73 270.4
Bma01g01148 . 64 271 Glutathione S-transferase Gene Family AT1G75270 57.4 9.0e-71 263.5
Bma01g01148 . 53 273 Glutathione S-transferase Gene Family AT5G16710 71.9 1.4e-97 352.8
Bma08g01128 . 3 211 Glutathione S-transferase Gene Family AT5G16710 52.6 3.9e-60 228.4
Bma01g02091 . 1 267 Glutathione S-transferase Gene Family AT1G77290 66.8 1.0e-100 363.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000291 5 5 16 3 3 4 0 3 4 5 2 4 5 4 5 5 4 4 3 4 3 8 4 5 5 8 2 4 1 17 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00909 Bma_Chr13 FPKM 2.380594 2.855273 1.047362 1.343423 6.444242 7.157051 6.902331 0.818924 0.428693 0.451334