Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00915 ATGAATAACGAGTTCGCCCAAATCGGGAAATACTCGCTGCTCAAGGATTTTAGCCTCGAATTGGATGGGAAGGATGAAACTTTTGATGTCTGCTTTTGGGTTTATCTCAAAAGTTCTGATACCTTCCCTGCTACAATACTTGATCAGGTTTACTCAGATGGAACAGATGCAGTTCCTTTTATCATTTTAAATGAAAAGCAGCAATTAGTTGTTCTGCTATTGCATAACTTAACCAATAAAGCTCATGATCTTGGCACTCCCTCTTCCTGGACTGAAGTTCCACATGTAGTGATGGAGAGTGAGTTTCCTCAAGAAGAATGGGTTCATTTTGGGTTACAGATATCTACCACGTTCACGAGGATGTTCATTAACGGGAACTCTGTGGGGGAGAAGTTTTCATCAGTCGAAGATGAACACAAATCGACTTCCGTGGGCACGATTTTTCTGGTTGGCAGAAAAGATGGGAAGACTGTGGAAGGGTATGTTCACAATGCAGAAGTCTTGCCCCCCAAAATGAGATCAATCAAGAGACATTATCATAAGGATCCACCTATTCGATTATCTATTGACAACTCCTCTACCTCCGAGATTGAAGTAGGCGATGATGGTGTGTGGAGTATTGTTGGCGGCAAGGCATCCTGTCGCAGAAACTTTTCGTTGGATGTTATTTTAACAGATTTCTCAGGACAACCTGTATTAAAGGAAATGGAGGTTGTTGCTTCCCTTATCTTTGCGCACAACGAAAAACCTGTGGAGAAAACAAGTGATAAAGAGCCTCCCCTTTTTGCAACCTACGATGGAATCGAATTTCCTTCTTGTGATCGACCGAGTAAACTTTTGCATGGGAGATCATCCTTTAAGCTAAAGATATCCCAGCTTTCGTCCAAGTGTGATAATCGGTTATTTTGTATTAGATTTCACGCACCTGAAGATGGAAGTTATTCCTTCCATGAAGTAGTATCCCCTCCAATTCGTTGTATTTCCCGGAGTAGAAATACACGAGTAACGCCATTATGGAAAAATTTAGCAACTCCCATCAACCCCGTTGAAAATTTGACCACTTCCGATTCTAAATTTAGTCGTAAAGGTATGCAAAAAAAAAATACAAGTCCTCCATCTATGATGCCTGATAGATTAGAACAAGTTAGAATTTCTGCAACCTCAAGCGACTCGCCGAGCGTAGAGCGACCTGATGAAGAATGCAGCTCCCATATCATCAATTGCAATCAGTCGTCATGCATCATCGAATATCAGGTGGAAAATGTATCCGAGCCAAGTTTGGAAGGGGGAACAGAGGACAGTGAAGAAGCAGAAGACTCACCGTCTGTTTCGGGAAGCAATGAGCGTAGAACTTCGGATTTCAAATCAACGTCAAACAGACTAAATCTAATCTCAGATGCTAGCGTTTTCAAATACTGCCTAGCGGACGTAGCTGAGAGGTCACTCATGCTCAGGGAGATAGCAACCACTGTTTCAGATGAAGATGTTTTTGAATTTGCAGCTCAGATTTCCCTCTATTCAGGTTGCTTACACCACAGGGGCCAAATTTTAATGGCAAAAGGATTGATTGAGGAAGGAACACAAGTTTGGAATTCACTGTCACAGAACAATGACCATGTTCTTTGGGACAGTTTGGTTTTCCATATCCAAGAGCAATTTATGCGAATTTCTCAATGCAGCTCTCGATCTCTCACGCAACAGGACTTTGAGACCTTGAGAACTATTGCTGGTTGCCAGAAGTATATGGCCATAGAGAACTTTGAGAGGATGTGGTGTTGGCTATACCCAGTAGCTTTTGCATTATCAGGAGAATGGATGAATTCAATGTGGAGTTCAACATCACCCAAGTGGATTGAAGGTTTCATCACGAAAGAGGATGCTGAATCTTCGCTCCGAGGTCCAAGGGGCCCGCAAGAGCCGGGCACTTTTATTCTCCGTTTCCCGACTTCTCGAAGCTGGCCCCACCCTGATGCTGGTAATTTGGTTGTCACTTACGTCGGCACTGACTACTCCCTTCATCATCGTCTTCTTTCCTTCGATTATATGTACAGGTGCTAA 2058 42.95 MNNEFAQIGKYSLLKDFSLELDGKDETFDVCFWVYLKSSDTFPATILDQVYSDGTDAVPFIILNEKQQLVVLLLHNLTNKAHDLGTPSSWTEVPHVVMESEFPQEEWVHFGLQISTTFTRMFINGNSVGEKFSSVEDEHKSTSVGTIFLVGRKDGKTVEGYVHNAEVLPPKMRSIKRHYHKDPPIRLSIDNSSTSEIEVGDDGVWSIVGGKASCRRNFSLDVILTDFSGQPVLKEMEVVASLIFAHNEKPVEKTSDKEPPLFATYDGIEFPSCDRPSKLLHGRSSFKLKISQLSSKCDNRLFCIRFHAPEDGSYSFHEVVSPPIRCISRSRNTRVTPLWKNLATPINPVENLTTSDSKFSRKGMQKKNTSPPSMMPDRLEQVRISATSSDSPSVERPDEECSSHIINCNQSSCIIEYQVENVSEPSLEGGTEDSEEAEDSPSVSGSNERRTSDFKSTSNRLNLISDASVFKYCLADVAERSLMLREIATTVSDEDVFEFAAQISLYSGCLHHRGQILMAKGLIEEGTQVWNSLSQNNDHVLWDSLVFHIQEQFMRISQCSSRSLTQQDFETLRTIAGCQKYMAIENFERMWCWLYPVAFALSGEWMNSMWSSTSPKWIEGFITKEDAESSLRGPRGPQEPGTFILRFPTSRSWPHPDAGNLVVTYVGTDYSLHHRLLSFDYMYRC 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39553039 39558397 - Bma009992.1 Bma13g00915 93644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00915 685 MobiDBLite consensus disorder prediction 350 375 - -
Bma13g00915 685 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 684 IPR001217 GO:0003700|GO:0006355|GO:0007165
Bma13g00915 685 MobiDBLite consensus disorder prediction 424 457 - -
Bma13g00915 685 Gene3D SH2 domain 604 683 IPR036860 -
Bma13g00915 685 MobiDBLite consensus disorder prediction 440 457 - -
Bma13g00915 685 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 154 IPR013320 -
Bma13g00915 685 MobiDBLite consensus disorder prediction 350 378 - -
Bma13g00915 685 ProSiteProfiles Src homology 2 (SH2) domain profile. 617 685 IPR000980 -
Bma13g00915 685 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 684 - -
Bma13g00915 685 SUPERFAMILY SH2 domain 613 676 IPR036860 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00915 - - - qsu:111989336 770.385
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g12 . . . . Bpe09g00273 . . Bma13g00915 . . Cma01g01277 . Car01g01092 . . . Cpe02g00648 Bhi09g03581 Tan01g4242 . . . . . . . . . . . . . . . . Lsi04g01968 Csa04g02247 . . . Blo10g00716 . Bda12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000795 3 6 3 2 3 0 4 0 0 2 2 0 4 3 2 4 0 2 4 0 3 2 1 1 2 3 1 1 2 5 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58252 None None None None Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00915 Bma_Chr13 FPKM 0.999718 1.349328 9.063519 8.920583 6.542119 5.682137 6.992498 15.776701 14.732863 12.684279