Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00919 ATGGCTGAATATACCCCAAAGAACATCCTCATAACTGGGGCTGCTGGTTTTATTGCATCTCATGTTGCCAATCGGCTTGTCAAACTCTACCCAGACTACAAGATTGTTGTGCTTGACAAGCTTGATTACTGTTCTAATCTGAAGAATCTTCTCCCTTCGAAATCATCTCCCAACTTCAAGTTTGTGAAGGGGGATATTGGCAGCGCCGACCTGGTCAATTATCTCCTCATCACCGAGTCGATCGACACGATTATGCATTTTGCCGCACAAACCCACGTCGATAACTCTTTCGGTAATAGTTTCGAGTTCACGAAGAACAACATATATGGAACTCACGTTCTTCTCGAAGCTTGCAAAGTGACTGGCCAAATCCGAAGGTTCATCCATGTCAGCACCGACGAGGTCTACGGTGAGACAGATGAGGATGCAGTGGTTGGAAATCACGAGGCCTCTCAACTCCTTCCAACAAATCCTTACTCGGCAACAAAAGCCGGAGCCGAAATGCTTGTGATGGCGTATGGCAGGTCGTATGGATTGCCTGTGATCACGACGAGAGGCAATAATGTTTACGGGCCGAATCAATTTCCGGAGAAATTGATTCCGAAATTCATCCTCTTGGCCATGGAAGGAAAGCCTCTTCCGATTCATGGAGATGGATCAAACGTCAGGAGTTATCTGTATTGCGAGGACGTTGCAGAGGCTTTTGAAGTCGTTCTTCACAAAGGCGAAGTCGGTCATGTTTACAATATCGGAACGAAGAAAGAACGGAGAGTTATAGATGTTGCTGAAGATGTTTGCAGACTTTTCTCGATGGATCCAGCCGAGAGTATCAAATTTGTCGAAAACAGGCCCTTTAACGACCAGCGATACTTTCTGGATGATCAAAAACTCAAAAACATCGGATGGTCCGAGCGGACTACTTGGGAGGAAGGACTAAAGAAGACTATGGATTGGTATATCAAAAATCCTGATTGGTGGGGCGATGTGTCCGGGGCTTTGCTTCCACACCCGAGAATGCTTATGATGCCAGGAGGATTCGAAAGGCATCAGGACGGATCAGAAGAGAAAAAACCGGCTTCTTCAGCCTCGAGCAATCCTCCTCTGGTGATTCCACCTCCCTCCACCAAGTCTCCTCCTCGAGAGACAGCTCTCAAGTTCTTGATCTATGGCAGAAGTGGGTGGATTGGCGGTCTTCTTGGTAAAATATGCCAAAAGCAAGGAATTTCATATGAATACGGAAAAGGGCGTCTGGAGGATCGATTGTCCCTCGTATCTGACATTCGGAATGTTAAACCGACTCATGTTTTCAATGCTGCTGGTGTGACCGGAAGACCGAATGTCGATTGGTGTGAAAGTCATAAAACGGAAACGATTCGAACGAATGTTGTCGGAACTCTGAACTTAGCTGATGTTTGCAGGGAAAATGGACTGCTTATGATGAATTTTGCCACTGGCTGCATATTTGAATATAATCATGCTCACCCACAAGGATCTGGAATCGGATTTTCCGAGGAAGACACGCCCAATTTTACGGGTTCTTTTTACTCGAAAACGAAGGCAATGGTGGAGGAGCTCTTGAAAGAATACGAGAATGTGTGCACTCTAAGAGTTCGCATGCCGATATCATCCGATCTGAACAACCCGAGAAACTTCATCACCAAAATCTCTCGATACAACAAAGTCGTGAACATCCCAAACAGCATGACCCATTGGAACTTCACTAATCCCGGCGTCGTGAGCCATAACGAGATTCTCGAAATGTACAAGAATTACATCGACTCCAAGTTCAAGTGGGAGAACTTCACGCTCGAGGAGCAAGCAAAAGTGATCGTCGCTCCGAGAAGCAACAACGAAATGGATGCATCCAAGTTGAAGAAGGAGTTCCCCGAATTATTGTCGATAAAAGAGTCGTTGATCAAGTACGTCTTCGAATCGAACAAGAAAACTACTTCTGCATAA 1959 45.74 MAEYTPKNILITGAAGFIASHVANRLVKLYPDYKIVVLDKLDYCSNLKNLLPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMEGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVGHVYNIGTKKERRVIDVAEDVCRLFSMDPAESIKFVENRPFNDQRYFLDDQKLKNIGWSERTTWEEGLKKTMDWYIKNPDWWGDVSGALLPHPRMLMMPGGFERHQDGSEEKKPASSASSNPPLVIPPPSTKSPPRETALKFLIYGRSGWIGGLLGKICQKQGISYEYGKGRLEDRLSLVSDIRNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVVGTLNLADVCRENGLLMMNFATGCIFEYNHAHPQGSGIGFSEEDTPNFTGSFYSKTKAMVEELLKEYENVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTHWNFTNPGVVSHNEILEMYKNYIDSKFKWENFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYVFESNKKTTSA 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39612345 39615965 + Bma009996.1 Bma13g00919 93648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00919 652 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 383 641 IPR036291 -
Bma13g00919 652 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Bma13g00919 652 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Bma13g00919 652 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Bma13g00919 652 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 1 647 - -
Bma13g00919 652 MobiDBLite consensus disorder prediction 343 379 - -
Bma13g00919 652 Gene3D - 200 322 - -
Bma13g00919 652 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 647 - -
Bma13g00919 652 Pfam RmlD substrate binding domain 385 558 IPR029903 -
Bma13g00919 652 Gene3D - 9 313 - -
Bma13g00919 652 Gene3D - 378 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00919 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - qsu:111999181 1178.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma07g01155 Bma13g00919 CCT
Bma10g00464 Bma13g00919 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00919 Bma-Chr13:39612345 Bma14g00268 Bma-Chr14:3154681 0 dispersed
Bma02g00332 Bma-Chr2:4693439 Bma13g00919 Bma-Chr13:39612345 7.31E-12 transposed
Bma10g00464 Bma-Chr10:5256232 Bma13g00919 Bma-Chr13:39612345 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00919 Bma_Chr13 FPKM 58.282036 65.05616 39.160885 40.901287 89.188484 93.321243 89.61425 8.635092 8.239485 6.629512