Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00920 ATGAAGATTCAATGCAATGTCTGCGAGGCAGCGGAGGCGCACGTTTTATGCTTCGCGGACGAGGCGGCGTTATGCTGGGCTTGCGACGAGAAGGTTCACGCAGCCAACAAGCTGGCCAGCAAGCACCAGAGGGTTCCTCTTTCTGGCTCTTCTTCTCAAATGCCCAAATGTGACATTTGCCAGGAGATGAGTGGCTATATCTTCTGTTTAGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTCGCAATACACACAGCAAATGCTTTTGTATTGGCTCATCAGAGGTTTCTTCTTACTGGTGTGAAAGTAGGTCTTGAACCTCTTGCTTCCTCTTCCGAGTTGAAGCCTCAAAGTAGAGAGAAAACTTTGGAATCAAAGGGTAGCTCAGGCTCTCAAAGAGGCTTATCAAAGCCGTCAGCTGGTGAATTCAGTCAACAATTGCCTGTAAATCGTTGTGGGATTGGAGACTTCGCACCAACTGAGGCTCCTACGCATAACGGAGGATTTGTTTCTGGTGGGCTTCCTCAGTGGCATTTAGACGAGTTTATGGGTATGACTGAATTCAGTCAGAATTACCGGCCCGGCTATATGGACAATGGTTCATCTAAGGCTGATAGTGGTAAGCTCGGAGATTCCGACTCGTCCGTTCTAAGAACGGGCGACGGCGATCTGGACGACAACGATGAGAGCTTGGGTCAGGTTCCGGATTCATCTCGGGCCGTTCCTCAGAATCCGTCTCCACCTACAGCTTCAGGGTTGTACTGGCCGAGAAATTACTACAATTCATGGGATACCACAGCCTATGTTCCCGACATATACAGCTCGTCACCGGAGCAGAAGCCCCACCTCTATCGACATGGTGGTTTGGCATCAAAACGGCGGAGGCAATTCTAG 897 49.72 MKIQCNVCEAAEAHVLCFADEAALCWACDEKVHAANKLASKHQRVPLSGSSSQMPKCDICQEMSGYIFCLEDRALLCRKCDVAIHTANAFVLAHQRFLLTGVKVGLEPLASSSELKPQSREKTLESKGSSGSQRGLSKPSAGEFSQQLPVNRCGIGDFAPTEAPTHNGGFVSGGLPQWHLDEFMGMTEFSQNYRPGYMDNGSSKADSGKLGDSDSSVLRTGDGDLDDNDESLGQVPDSSRAVPQNPSPPTASGLYWPRNYYNSWDTTAYVPDIYSSSPEQKPHLYRHGGLASKRRRQF 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39618056 39620670 + Bma009997.1 Bma13g00920 93649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00920 298 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma13g00920 298 MobiDBLite consensus disorder prediction 232 257 - -
Bma13g00920 298 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 297 - -
Bma13g00920 298 MobiDBLite consensus disorder prediction 111 144 - -
Bma13g00920 298 CDD Bbox1_BBX-like 5 47 - -
Bma13g00920 298 Gene3D Classic Zinc Finger 1 93 - -
Bma13g00920 298 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bma13g00920 298 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma13g00920 298 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bma13g00920 298 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 297 - -
Bma13g00920 298 MobiDBLite consensus disorder prediction 124 144 - -
Bma13g00920 298 MobiDBLite consensus disorder prediction 272 298 - -
Bma13g00920 298 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Bma13g00920 298 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Bma13g00920 298 MobiDBLite consensus disorder prediction 195 257 - -
Bma13g00920 298 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00920 - - - csv:101209756 380.563
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00461 Bma13g00920 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00152 Bma-Chr5:4548087 Bma13g00920 Bma-Chr13:39618056 1.97E-38 dispersed
Bma12g00543 Bma-Chr12:21913214 Bma13g00920 Bma-Chr13:39618056 3.54E-35 dispersed
Bma13g00920 Bma-Chr13:39618056 Bma15g00960 Bma-Chr15:36260262 6.06E-19 dispersed
Bma06g01437 Bma-Chr6:51082648 Bma13g00920 Bma-Chr13:39618056 9.48E-46 transposed
Bma10g00461 Bma-Chr10:5244910 Bma13g00920 Bma-Chr13:39618056 2.92E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g32 . . . . Bpe09g00270 . Bma10g00461 Bma13g00920 Cmo16g00458 Cmo04g00707 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1023 . . . . . . Blo10g00720 . . . . . . . . . Cma04g00659 Cma16g00426 . . Cpe14g00359 Cpe01g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58254 PF00643 zf-B_box 1.80E-06 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00920 Bma_Chr13 FPKM 0.296951 0.036844 0.10811 0.0 0.0 0.18902 0.000004 0.0 0.0 0.0