Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00925 ATGGGTTGTGCTGGATCGTCGCAGACCAAAGGAGATGGAAATGTGAAAAGGATTCGAAAACCAAGACCTTGGCAGCATCCTCAGCCAATTTCAAGGACTCAGCTTGCACAAATGCGAGAGGAGTTTTGGGACACTGCACCTCACTATGGTGGCAGAAGAGAGATTTGGGATGCTCTCCGAGCTGCGGCTGAAGCTGATATAACGCTCGCCCAGGCAATAGTGGACAGTGCCGGGGTCATCGTTCAAAATACTGATTTGACAATTTGCTATGACGAGAGAGGTGCCAAATATGAATTACCGAAATATGTGCTGAGTGAGCCAACAAACTTGATTCCTGATAATTGA 345 47.25 MGCAGSSQTKGDGNVKRIRKPRPWQHPQPISRTQLAQMREEFWDTAPHYGGRREIWDALRAAAEADITLAQAIVDSAGVIVQNTDLTICYDERGAKYELPKYVLSEPTNLIPDN 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39686888 39688909 - Bma010003.1 Bma13g00925 93654

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00925 114 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 111 IPR039869 -
Bma13g00925 114 Gene3D - 31 104 IPR038169 -
Bma13g00925 114 MobiDBLite consensus disorder prediction 1 33 - -
Bma13g00925 114 Pfam Ubiquitin-binding domain 16 112 IPR032752 -
Bma13g00925 114 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00925 - - - tcc:18594333 215.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma13g00925 Bma14g00272 CCT
Bma13g00925 Bma14g00272 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00779 Bma-Chr13:28198367 Bma13g00925 Bma-Chr13:39686888 1.58E-35 dispersed
Bma13g00925 Bma-Chr13:39686888 Bma14g00272 Bma-Chr14:3241613 1.07E-68 dispersed
Bma13g00925 Bma-Chr13:39686888 Bma07g01148 Bma-Chr7:45658383 1.23E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g91 Blo03g00703 . . Bda09g00548 Bpe09g00264 Bpe08g00988 . Bma13g00925 Cmo16g00465 . . . Car01g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00727 . Bda12g00815 Bpe11g00442 . . Bma14g00272 . Cmo01g01308 . Cma04g00665 Cma16g00432 . . Cpe14g00364 Cpe01g00600 . . . . . . . . . . . . . . . Csa04g00814 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001260 3 5 3 5 4 1 3 2 1 2 2 2 3 2 2 2 2 0 3 2 2 2 2 2 2 2 2 5 3 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00925 Bma_Chr13 FPKM 20.190092 19.792027 16.836668 17.124176 67.605469 68.53624 67.773643 1.950433 1.755455 2.509004