Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00928 ATGTCTCTTCGCAAAGCTTTGTTGTCTCGGATTTCGTCTTCCAAGTCTTATAAGGAATCCAAAGGTGTGGAAGAGGTTGCGCGAGTCGATCCGGAGATCGGGGAAGATTTGTCAGCCGAGTGTTCTGGCGAAGTTTGTAACTCTTCCTGGTCTTCGATGCTTCCGGAGATTCTCAGCGAGATTATAAGGCGCGTTGAGGTTAGTGACGAACTGTGGCCTCACAGACAGAACGTTGTTGCTTGTGCGTGTGTGTGCAAGCGCTGGAGGGATCTTGCGAAGGAGATCGTCGCGGCTCCTTCGCTTAGTGGCAAAATCACTTTCCCTTCTTGTCTTAAGCAGCCTGGGCCACGCGACCTTCCGCATCAATGTATTATAAAACGAAACAAGAAAACCTCAACTTTTTATCTCCATCTCGCTCTTAGTCAATCATTCACGGAGAAGGGAAAGTTTCTTTTAGCTGCACGGAGAAATAGGCATGGAGCTCACACAGAGTATATTATTTCTCTTGATGCTGAAGACATATCTCAAGGAAGCAATGCTTATGTAGGAAAATTAAGCTCGGACTTTATTGGCAACAATTTCACAATTTATGATAGCCAACCACCACACAGTGGTGCAAAGCCATCAAGCAGTAAAGCCAGCCGTCGTTTTGCAAGCAAGCAAATAAGTCCCCAAGTTCCTGCTGGCAACTTTGAGGTCGGGCAAGTCTCTTACAAATTCAACCTTTTGAAATCGAGAGGTCCAAGAAGGATGATGTGCTTGTTGAAATGCCCATGGTTGGGAGAAACTGCCCTAGATAAACCGTTGGAGCCCTCCAAGACAGAGAAATCAGATTTTTCGTCTCCAGGTTTCACGATCTTGAAAAACAAAGCTCCAAGATGGCATCAGCATCTACAATGCTGGTGTTTGAATTTCCATGGGCGAGTGACGGTGGCTTCAGTGAAGAACTTTCAACTCATTGCCACCACTGACCAGAGCCAACCTGGTGGAAAAGGAGACGAAGAAACAGTTCTCCTCCAGTTTGGGAAAGTGAGCGACAACATCTTCACCATGGATTACAGGCAGCCATTGTCGGCATTTCAAGCTTTCGCCATTTGCCTCACCAGCTTCGGCACAAAACTTGCCTGCGAGTAG 1134 46.83 MSLRKALLSRISSSKSYKESKGVEEVARVDPEIGEDLSAECSGEVCNSSWSSMLPEILSEIIRRVEVSDELWPHRQNVVACACVCKRWRDLAKEIVAAPSLSGKITFPSCLKQPGPRDLPHQCIIKRNKKTSTFYLHLALSQSFTEKGKFLLAARRNRHGAHTEYIISLDAEDISQGSNAYVGKLSSDFIGNNFTIYDSQPPHSGAKPSSSKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMMCLLKCPWLGETALDKPLEPSKTEKSDFSSPGFTILKNKAPRWHQHLQCWCLNFHGRVTVASVKNFQLIATTDQSQPGGKGDEETVLLQFGKVSDNIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39771682 39774628 - Bma010006.1 Bma13g00928 93657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00928 377 SUPERFAMILY Tubby C-terminal domain-like 99 377 IPR025659 -
Bma13g00928 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Bma13g00928 377 Pfam Tub family 111 372 IPR000007 -
Bma13g00928 377 Gene3D - 44 101 - -
Bma13g00928 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Bma13g00928 377 Pfam F-box domain 50 96 IPR001810 GO:0005515
Bma13g00928 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Bma13g00928 377 MobiDBLite consensus disorder prediction 200 221 - -
Bma13g00928 377 Gene3D Tubby Protein; Chain A 106 377 IPR025659 -
Bma13g00928 377 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 377 - -
Bma13g00928 377 PANTHER TUBBY-RELATED 1 377 - -
Bma13g00928 377 SUPERFAMILY F-box domain 48 93 IPR036047 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00928 Bma-Chr13:39771682 Bma12g00402 Bma-Chr12:8538269 7.14E-124 dispersed
Bma13g00928 Bma-Chr13:39771682 Bma04g01098 Bma-Chr4:24956520 1.87E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58256 PF01167 Tub 2.90E-100 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00928 K19600 - mnt:21387850 552.747