Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00928 ATGTCTCTTCGCAAAGCTTTGTTGTCTCGGATTTCGTCTTCCAAGTCTTATAAGGAATCCAAAGGTGTGGAAGAGGTTGCGCGAGTCGATCCGGAGATCGGGGAAGATTTGTCAGCCGAGTGTTCTGGCGAAGTTTGTAACTCTTCCTGGTCTTCGATGCTTCCGGAGATTCTCAGCGAGATTATAAGGCGCGTTGAGGTTAGTGACGAACTGTGGCCTCACAGACAGAACGTTGTTGCTTGTGCGTGTGTGTGCAAGCGCTGGAGGGATCTTGCGAAGGAGATCGTCGCGGCTCCTTCGCTTAGTGGCAAAATCACTTTCCCTTCTTGTCTTAAGCAGCCTGGGCCACGCGACCTTCCGCATCAATGTATTATAAAACGAAACAAGAAAACCTCAACTTTTTATCTCCATCTCGCTCTTAGTCAATCATTCACGGAGAAGGGAAAGTTTCTTTTAGCTGCACGGAGAAATAGGCATGGAGCTCACACAGAGTATATTATTTCTCTTGATGCTGAAGACATATCTCAAGGAAGCAATGCTTATGTAGGAAAATTAAGCTCGGACTTTATTGGCAACAATTTCACAATTTATGATAGCCAACCACCACACAGTGGTGCAAAGCCATCAAGCAGTAAAGCCAGCCGTCGTTTTGCAAGCAAGCAAATAAGTCCCCAAGTTCCTGCTGGCAACTTTGAGGTCGGGCAAGTCTCTTACAAATTCAACCTTTTGAAATCGAGAGGTCCAAGAAGGATGATGTGCTTGTTGAAATGCCCATGGTTGGGAGAAACTGCCCTAGATAAACCGTTGGAGCCCTCCAAGACAGAGAAATCAGATTTTTCGTCTCCAGGTTTCACGATCTTGAAAAACAAAGCTCCAAGATGGCATCAGCATCTACAATGCTGGTGTTTGAATTTCCATGGGCGAGTGACGGTGGCTTCAGTGAAGAACTTTCAACTCATTGCCACCACTGACCAGAGCCAACCTGGTGGAAAAGGAGACGAAGAAACAGTTCTCCTCCAGTTTGGGAAAGTGAGCGACAACATCTTCACCATGGATTACAGGCAGCCATTGTCGGCATTTCAAGCTTTCGCCATTTGCCTCACCAGCTTCGGCACAAAACTTGCCTGCGAGTAG 1134 46.83 MSLRKALLSRISSSKSYKESKGVEEVARVDPEIGEDLSAECSGEVCNSSWSSMLPEILSEIIRRVEVSDELWPHRQNVVACACVCKRWRDLAKEIVAAPSLSGKITFPSCLKQPGPRDLPHQCIIKRNKKTSTFYLHLALSQSFTEKGKFLLAARRNRHGAHTEYIISLDAEDISQGSNAYVGKLSSDFIGNNFTIYDSQPPHSGAKPSSSKASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMMCLLKCPWLGETALDKPLEPSKTEKSDFSSPGFTILKNKAPRWHQHLQCWCLNFHGRVTVASVKNFQLIATTDQSQPGGKGDEETVLLQFGKVSDNIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39771682 39774628 - Bma010006.1 Bma13g00928 93657

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00928 377 SUPERFAMILY Tubby C-terminal domain-like 99 377 IPR025659 -
Bma13g00928 377 ProSitePatterns Tub family signature 1. 305 318 IPR018066 -
Bma13g00928 377 Pfam Tub family 111 372 IPR000007 -
Bma13g00928 377 Gene3D - 44 101 - -
Bma13g00928 377 ProSitePatterns Tub family signature 2. 362 377 IPR018066 -
Bma13g00928 377 Pfam F-box domain 50 96 IPR001810 GO:0005515
Bma13g00928 377 PRINTS Tubby superfamily signature 287 304 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 165 181 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 230 257 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 181 205 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 305 321 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Bma13g00928 377 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Bma13g00928 377 MobiDBLite consensus disorder prediction 200 221 - -
Bma13g00928 377 Gene3D Tubby Protein; Chain A 106 377 IPR025659 -
Bma13g00928 377 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 377 - -
Bma13g00928 377 PANTHER TUBBY-RELATED 1 377 - -
Bma13g00928 377 SUPERFAMILY F-box domain 48 93 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00928 K19600 TUB, TULP; tubby and related proteins - mnt:21387850 552.747
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00928 Bma-Chr13:39771682 Bma12g00402 Bma-Chr12:8538269 7.14E-124 dispersed
Bma13g00928 Bma-Chr13:39771682 Bma04g01098 Bma-Chr4:24956520 1.87E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g106 . . . . Bpe09g00261 . . Bma13g00928 Cmo16g00475 Cmo04g00614 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00732 . . . . . . . . . Cma04g00575 Cma16g00440 Car04g00544 . Cpe14g00370 Cpe01g00519 . . . . . . . . . . . . . . . Csa04g00806 Chy06g01174 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma05g00585 . 1 426 TUB Transcription Factor Family AT1G76900 70.5 2.3e-172 602.1
Bma05g00558 . 1 430 TUB Transcription Factor Family AT1G76900 69.3 9.0e-169 590.1
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT1G76900 69.2 7.6e-168 587.0
Bma12g01166 . 1 427 TUB Transcription Factor Family AT1G76900 68.8 1.3e-167 586.3
Bma04g00369 BCT 1 447 TUB Transcription Factor Family AT1G76900 65.9 6.7e-164 573.9
Bma12g00381 . 1 421 TUB Transcription Factor Family AT1G76900 68.6 1.9e-163 572.4
Bma12g00402 . 1 421 TUB Transcription Factor Family AT1G76900 68.9 2.5e-163 572.0
Bma04g01707 . 1 433 TUB Transcription Factor Family AT1G76900 66.7 2.6e-160 562.0
Bma04g00212 . 1 413 TUB Transcription Factor Family AT1G76900 51.2 2.5e-118 422.5
Bma12g00381 . 168 421 TUB Transcription Factor Family AT1G25280 73.0 3.1e-100 361.7
Bma12g00402 . 168 421 TUB Transcription Factor Family AT1G25280 72.7 5.2e-100 360.9
Bma05g00558 . 177 430 TUB Transcription Factor Family AT1G25280 70.8 1.3e-98 356.3
Bma05g00585 . 173 426 TUB Transcription Factor Family AT1G25280 70.8 1.7e-98 355.9
Bma01g02507 BCT 173 424 TUB Transcription Factor Family AT1G25280 67.7 4.7e-93 337.8
Bma12g01166 . 173 427 TUB Transcription Factor Family AT1G25280 64.8 4.0e-92 334.7
Bma04g00369 BCT 194 447 TUB Transcription Factor Family AT1G25280 64.8 6.8e-92 334.0
Bma04g01707 . 183 433 TUB Transcription Factor Family AT1G25280 67.9 1.1e-89 326.6
Bma04g01098 . 156 387 TUB Transcription Factor Family AT1G25280 53.6 3.9e-71 265.0
Bma04g00212 . 177 413 TUB Transcription Factor Family AT1G25280 54.7 5.3e-68 254.6
Bma01g02327 BCT 231 463 TUB Transcription Factor Family AT1G25280 53.8 9.3e-65 243.8
Bma04g01098 . 98 387 TUB Transcription Factor Family AT5G18680 63.1 1.9e-98 355.9
Bma01g02507 BCT 112 424 TUB Transcription Factor Family AT5G18680 51.1 8.4e-83 303.9
Bma12g00402 . 111 421 TUB Transcription Factor Family AT5G18680 53.0 9.3e-82 300.4
Bma12g00381 . 111 421 TUB Transcription Factor Family AT5G18680 52.5 1.2e-81 300.1
Bma05g00585 . 112 426 TUB Transcription Factor Family AT5G18680 51.9 3.9e-80 295.0
Bma04g01707 . 123 433 TUB Transcription Factor Family AT5G18680 50.8 1.1e-79 293.5
Bma05g00558 . 112 430 TUB Transcription Factor Family AT5G18680 51.6 1.9e-79 292.7
Bma04g00212 . 114 413 TUB Transcription Factor Family AT5G18680 50.6 1.1e-77 287.0
Bma05g01061 . 98 247 TUB Transcription Factor Family AT5G18680 58.6 1.1e-42 170.6
Bma04g00212 . 1 413 TUB Transcription Factor Family AT2G18280 56.2 4.5e-124 441.4
Bma12g01166 . 1 427 TUB Transcription Factor Family AT2G18280 52.5 9.0e-117 417.2
Bma12g00381 . 1 421 TUB Transcription Factor Family AT2G18280 52.2 2.6e-116 415.6
Bma12g00402 . 1 421 TUB Transcription Factor Family AT2G18280 52.2 4.5e-116 414.8
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.0 2.9e-115 412.1
Bma04g01098 . 1 387 TUB Transcription Factor Family AT2G18280 53.3 9.3e-114 407.1
Bma05g00585 . 1 426 TUB Transcription Factor Family AT2G18280 50.7 7.9e-113 404.1
Bma05g00558 . 1 430 TUB Transcription Factor Family AT2G18280 50.5 3.0e-112 402.1
Bma04g01707 . 1 433 TUB Transcription Factor Family AT2G18280 50.7 6.7e-112 401.0
Bma04g01098 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 1.3e-163 572.8
Bma01g02507 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.2 1.0e-131 466.8
Bma12g01166 . 1 427 TUB Transcription Factor Family AT2G47900 54.2 1.1e-130 463.4
Bma12g00381 . 1 421 TUB Transcription Factor Family AT2G47900 55.5 1.9e-130 462.6
Bma05g00585 . 1 426 TUB Transcription Factor Family AT2G47900 55.0 9.6e-130 460.3
Bma12g00402 . 1 421 TUB Transcription Factor Family AT2G47900 55.0 1.3e-129 459.9
Bma04g00369 BCT 1 447 TUB Transcription Factor Family AT2G47900 52.6 8.1e-129 457.2
Bma04g01707 . 1 433 TUB Transcription Factor Family AT2G47900 55.6 5.3e-128 454.5
Bma05g00558 . 1 430 TUB Transcription Factor Family AT2G47900 54.2 6.9e-128 454.1
Bma04g00212 . 1 413 TUB Transcription Factor Family AT2G47900 53.6 1.4e-117 419.9
Bma05g01061 . 1 247 TUB Transcription Factor Family AT2G47900 59.3 1.1e-82 303.9
Bma15g00428 . 36 305 TUB Transcription Factor Family AT1G16070 53.3 9.2e-74 273.9
Bma01g02507 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 2.9e-146 515.0
Bma05g00585 . 65 426 TUB Transcription Factor Family AT1G43640 67.4 8.0e-144 506.9
Bma12g00381 . 64 421 TUB Transcription Factor Family AT1G43640 67.6 1.4e-143 506.1
Bma12g00402 . 64 421 TUB Transcription Factor Family AT1G43640 67.6 1.8e-143 505.8
Bma12g01166 . 65 427 TUB Transcription Factor Family AT1G43640 65.3 2.3e-143 505.4
Bma05g00558 . 65 430 TUB Transcription Factor Family AT1G43640 66.1 4.8e-141 497.7
Bma04g00369 BCT 65 447 TUB Transcription Factor Family AT1G43640 61.6 7.7e-139 490.3
Bma04g01707 . 65 433 TUB Transcription Factor Family AT1G43640 63.6 4.0e-135 478.0
Bma04g01098 . 47 387 TUB Transcription Factor Family AT1G43640 51.9 3.3e-105 378.6
Bma04g00212 . 67 413 TUB Transcription Factor Family AT1G43640 50.7 6.0e-99 357.8
Bma04g00212 . 25 413 TUB Transcription Factor Family AT1G47270 63.5 3.0e-133 471.9
Bma01g02507 BCT 48 424 TUB Transcription Factor Family AT1G47270 56.7 1.1e-114 410.2
Bma05g00585 . 48 426 TUB Transcription Factor Family AT1G47270 54.9 1.9e-111 399.4
Bma12g01166 . 31 427 TUB Transcription Factor Family AT1G47270 52.3 1.2e-110 396.7
Bma12g00381 . 1 421 TUB Transcription Factor Family AT1G47270 51.0 6.2e-110 394.4
Bma12g00402 . 1 421 TUB Transcription Factor Family AT1G47270 51.0 1.1e-109 393.7
Bma05g00558 . 48 430 TUB Transcription Factor Family AT1G47270 53.8 2.0e-108 389.4
Bma04g01098 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 1.4e-106 383.3
Bma04g01707 . 31 433 TUB Transcription Factor Family AT1G47270 51.0 1.9e-106 382.9
Bma01g02327 BCT 193 463 TUB Transcription Factor Family AT1G47270 51.5 1.1e-74 277.3
Bma13g00928 . 1 377 TUB Transcription Factor Family AT1G53320 68.1 4.0e-146 514.6
Bma04g01098 . 33 387 TUB Transcription Factor Family AT1G53320 50.1 2.6e-97 352.4
Bma04g01098 . 98 387 TUB Transcription Factor Family AT3G06380 63.1 1.1e-95 346.7
Bma12g00402 . 115 421 TUB Transcription Factor Family AT3G06380 51.9 3.4e-81 298.5
Bma12g00381 . 115 421 TUB Transcription Factor Family AT3G06380 51.3 2.2e-80 295.8
Bma01g02507 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 4.9e-80 294.7
Bma05g00585 . 116 426 TUB Transcription Factor Family AT3G06380 52.1 1.4e-79 293.1
Bma05g00558 . 116 430 TUB Transcription Factor Family AT3G06380 51.4 5.5e-79 291.2
Bma04g01707 . 123 433 TUB Transcription Factor Family AT3G06380 51.4 7.1e-79 290.8
Bma04g00212 . 118 413 TUB Transcription Factor Family AT3G06380 52.8 1.1e-76 283.5
Bma05g01061 . 98 247 TUB Transcription Factor Family AT3G06380 58.7 1.4e-42 170.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013611 0 1 1 1 1 0 2 0 0 0 1 0 2 1 1 2 0 0 2 0 1 1 1 1 1 1 1 2 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58256 PF01167 Tub 2.90E-100 CL0395 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00928 Bma_Chr13 FPKM 171.549408 186.529648 129.826477 133.552734 80.659645 69.045319 80.157593 150.077179 150.966629 151.609329