Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00930 ATGGCGAATCGGAATCTGGAGAATCTGGCTTCCATTGATGCGCAGCTTCGACTTCTGGTTCCTGGTAAATTGAGCGAGGATGACAAATTGGTTGAGTACGACGCTTTGCTTCTCGATCGATTCCTTGATATTTTACAGGATTTACACGGAGAAGATCTGAAAGAGACTGTCCAAGAGTGTTACGAGCATTCTGCTGAATACGAGGGGAAACATGATCCGAAGAAACTGGAGGAGTTGGGTAGCGTATTGACCAGTTTGGATCCCGGGGACTCCATTGTTATTTCGAAATCATTTGCTCACATGCTCAACTTGGCCAACTTGGCCGAGGAGGTTGAACTTGCTTATCGAAGACGGATTAAGTTGAAGAAGGGAGATTTTGTGGACGAGAACTCTGCATCGACCGAATCCGATATCGAAGAAACTTTTAAGAAACTCGTGGTTGAACTGAAGAAGTCTCCTCAAGAAGTCTTTGATGCTTTGAAGAACCAGACAGTCGACCTTGTCTTGACTGCTCATCCTACTCAATCTGTTCGAAGATCTTTGCTTCAAAAACATGCAAGGATAAGGAATTGTTTAGCCCAGATGTATGCGAAAGACATCACTCCGGACGATAAGCAGGAGCTCGACGAGGCACTTCAGAGAGAGATTCAAGCTGCGTTTCGTACGGATGAAATTCGGAGGACCCCTCCCACCCCACAAGATGAAATGAGAGCGGGAATGAGCTACTTCCACGAGACAATTTGGAAGGGTGTGCCGAAATTCCTGCGTCGAGTCGACACGGCTTTGAAAAACATAGGGATTGATGAACGTGTCCCCTACAATGCCCCTCTTATTCAGTTTTCATCTTGGATGGGTGGCGATCGTGATGGTAATCCGAGGGTGACTCCGGAGGTCACTAGAGACGTTTGTTTGTTGGCTAGAATGATGGCTGCTAACTTGTACTATTCGCAAATAGAGGATTTAATGTTTGAGTTATCGATGTGGCGATGCAATGACGAACTCCGTCAGCGAGCGGATGTGCTTCAAAGGTCTTCGAGGGGAGATGCAAAACACTACATAGAGTTTTGGAAGCAAGTACCGGCTAATGAACCCTATCGAGTTATTCTCGGAGATGTAAGGGACAAGTTATATCAAACTCGCGAACGCGCTCGTTATTTGCTGGCCAACGGATACTCTGACATTCCCGAGGATGCAACTTTCACCAATGTCGAGCAGTTCTTGGAACCTCTTGAGCTCTGCTATAGATCACTCTGTGCTTGTGGTGACCGTGCCATTGCCGATGGATCACTTCTTGATTTTTTGAGACAAGTCTCCACATTTGGACTGTCTCTTGTGAGACTTGATATTAGGCAAGAATCGGATCGTCATACAGATGTATTAGATGCCATTACCAACCATTTGGAAATTGGCTCTTATCGAGACTGGTCCGAGGAGAGCCGACAGGAATGGCTTTTATCTGAATTGAGCGGCAAGCGCCCACTATTTGGCCCTGATCTTCCCAAATCTGAAGAAATTGCTGATGTGTTGGACACATTTCACGTCATAGCTGAACTCCCTTCAGATAATTTTGGCGCATACATCATCTCTATGGCAACTGCTCCGTCTGATGTGCTTGCGGTTGAGCTTTTGCAGCGGGAATGTCGAGTGAAGAACCCTTTACGAGTTGTTCCACTTTTTGAGAAGCTTGCAGATCTGGAGGCTGCCCCTGCTGCTCTGGCTCGTCTTTTTTCAGTAGACTGGTATAGAAATCGGATTGATGGAAAGCAAGAAGTTATGATTGGCTACTCGGATTCTGGCAAAGATGCAGGTCGATTCTCTGCAGCCTGGCAATTGTACAAGGCCCAAGAAGAACTCATAAAGGTTGCTAAGCAATACGGGGTGAAACTGACTATGTTCCACGGTCGTGGTGGGACCGTCGGGAGAGGAGGTGGACCAACCCATCTGGCTATATTGTCTCAACCACCTGAAACGGTGCATGGTTCACTACGAGTCACGGTTCAGGGTGAAGTCATAGAGCAATGTTTTGGGGAGGAGCACTTGTGTTTCAGGACACTCCAGCGTTTTGCAGCTGCTACGTTGGAGCATGGAATGCATCCCCCAGTTTCTCCAAAACCCGAATGGAGAGCACTTATGGATGAAATGGCCGTTGTGGCGACAGAAGAGTACCGCTCCATCGTTTTCAAAGAGCCTCGATTTGTCGAGTATTTCCGACTTGCAACACCAGAGTTGGAATATGGTCGGATGAACATTGGGAAGCCGTCCGTCGAAACGAAAATTGCTGGACACAAGGATCTTCTTGAGGGGGACCCACATTTGAAGCAAAGGCTGCGCCTCCGAGATTCATACATCACTACTCTCAATGTTTGCCAAGCCTACACATTGAAACGAATCCGAGATCCTAACTACAATGTGACCCTACGGCCCCACATATCTAGAGAGATAATGGAAGCAACAAAGCCGGGGGATGAACTTGTTAAACTAAACCCGTTGATCGGGAAGAAGAAGTCGGTCGACATCTATGACAACATCAAGATTACATGGGTCACACTCTCCGGTCTTCTCAACTTCATCGACGGTGTCCGATTTCTCACCAAGATATATCATCCTAACATTGATAAGCTTGGGAGGATATGCCTTGATATTCTGAAAGACAAATGGAGTCCCGCTCTCCAAATAAGAACTGTGCTTTTAAGTATTCAAGCTCTGCTGAGTGCGCCAAACCCTGACGATCCACTTTCCGAGAACATTGCGAAGCATTGGAAAACAAATGAAGCTGAAGCCGTTGAAACAGCCAAGGAATGGTCCCGTTTATATGCAAGTGGTGCTTGA 2829 46.84 MANRNLENLASIDAQLRLLVPGKLSEDDKLVEYDALLLDRFLDILQDLHGEDLKETVQECYEHSAEYEGKHDPKKLEELGSVLTSLDPGDSIVISKSFAHMLNLANLAEEVELAYRRRIKLKKGDFVDENSASTESDIEETFKKLVVELKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLAQMYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGIDERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRQRADVLQRSSRGDAKHYIEFWKQVPANEPYRVILGDVRDKLYQTRERARYLLANGYSDIPEDATFTNVEQFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITNHLEIGSYRDWSEESRQEWLLSELSGKRPLFGPDLPKSEEIADVLDTFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECRVKNPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETVHGSLRVTVQGEVIEQCFGEEHLCFRTLQRFAAATLEHGMHPPVSPKPEWRALMDEMAVVATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGKPSVETKIAGHKDLLEGDPHLKQRLRLRDSYITTLNVCQAYTLKRIRDPNYNVTLRPHISREIMEATKPGDELVKLNPLIGKKKSVDIYDNIKITWVTLSGLLNFIDGVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWSRLYASGA 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39780582 39797477 - Bma010008.2 Bma13g00930 93659

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00930 942 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 2 3 752 - -
Bma13g00930 942 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 3 752 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 591 603 IPR033129 -
Bma13g00930 942 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 2 758 831 - -
Bma13g00930 942 Gene3D Ubiquitin Conjugating Enzyme 846 941 IPR016135 -
Bma13g00930 942 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Bma13g00930 942 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 867 882 IPR023313 -
Bma13g00930 942 SMART ubc_7 808 940 - -
Bma13g00930 942 Pfam Phosphoenolpyruvate carboxylase 36 751 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 Pfam Phosphoenolpyruvate carboxylase 757 813 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 Gene3D Phosphoenolpyruvate/pyruvate domain 308 443 - -
Bma13g00930 942 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 758 831 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 815 IPR015813 GO:0003824
Bma13g00930 942 SUPERFAMILY UBC-like 860 940 IPR016135 -
Bma13g00930 942 CDD UBCc 860 934 IPR000608 -
Bma13g00930 942 PRINTS Phosphoenolpyruvate carboxylase signature 589 609 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 PRINTS Phosphoenolpyruvate carboxylase signature 440 460 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 PRINTS Phosphoenolpyruvate carboxylase signature 631 660 IPR021135 GO:0006099|GO:0008964|GO:0015977
Bma13g00930 942 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 788 940 IPR000608 -
Bma13g00930 942 Pfam Ubiquitin-conjugating enzyme 860 933 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00930 K01595 ppc; phosphoenolpyruvate carboxylase [EC:4.1.1.31] - csv:101208329 1390.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma13g00930 Bma14g00266 CCT
Bma13g00930 Bma14g00266 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g01157 Bma-Chr7:45818739 Bma13g00930 Bma-Chr13:39780582 2.68E-31 dispersed
Bma13g00930 Bma-Chr13:39780582 Bma14g00266 Bma-Chr14:3133294 0 dispersed
Bma10g00474 Bma-Chr10:5444776 Bma13g00930 Bma-Chr13:39780582 1.19E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g116 Blo03g00699 . . . Bpe09g00257 Bpe08g00996 . Bma13g00930 . . Cma01g01246 Cma09g00817 Car01g01067 Car09g00734 Sed05g2521 Cpe06g00652 . Bhi09g03506 Tan01g4327 Cmetu07g1552 . . Mch11g1013 . Cla11g01713 Cam11g1782 Cec11g1803 Cco11g1808 Clacu11g1941 Cmu11g1752 Cre11g2160 . . . . Lsi04g02015 . . . . . . . Bpe11g00450 . . Bma14g00266 . Cmo01g01301 Cmo09g00812 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000971 4 3 4 5 4 1 3 2 1 2 2 2 4 2 1 4 2 4 4 2 2 2 2 2 2 2 2 5 3 2 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00930 Bma_Chr13 FPKM 8.170392 8.179031 14.513975 14.982678 7.65064 8.103927 7.518814 3.100483 3.066148 2.576229