Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00931 ATGGCGCACTCCTACTTAGCGTCTCAGTCTTCTTCTCTCTTCCGCTCAACTCTTGCGTTGCCGACCCTTACGAGGATTCCTTCTCTCAGAAATCGTTTCTTCTGTGTTTCTGCTGCCATGTCTTCCACTCCTCGCAAGGTTTTGGTACCCATTGCGAATGGAACTGAGCCGATTGAGGCGGTGGTGACTATCGACGTGCTTCGACGTGCTGGAGCTGATGTGACGGTGGCTTCTGTGGAGAATCAGCTTCGTGTTACCGCTGCTCATCAAGTCAAGATTGTCGCTGATTCTCTTATTTCGGATTGTTCTGACGCTGTGTTCGATCTTATTGCTCTTCCTGGAGGCATGCCAGGGGCTACTCATCTTCGAGATTGTGAAGTTCTAGAGAATATGGTGAAGAAACAGGCTTCAAATGGACGTCTGTATGCTGCAATTTGTGCTTCCCCTGCTGTGGCATTAGGGGCAACTTGCTATCCATCTTTTATGGAGCAATTAGGGTCTTTTGCAACTGCTGTTGAGACCTTGGTTCAGATCGATGGGAAAGTTGTGACAAGTAGAGGGCCTGGCACTACGATGGAGTTTTCTGTTGCACTAGTTGACCAGTTGTATGGAAAAGACAAAGCTGATGAAGTTTCAGGGCCACTGCTGATGCGCTCCAACCACGGCGATGAATATGCCATAAAAGATTTCAATCAAGTGGATTGGACGATTAATCACATTCCCAGGATTCTTGTGCCAATTGCTGATGGTTCTGAGGAAATGGAGGCTCTTTACATTGTTGACATCCTACGACGAGCAAAACTGGAAGTAGTGGTGGCTTCTGTTGAAAATAAGCTAGAAATCCTTTGCTCCCGCAAAGTTAAAATACAAGCAGATTTACTTCTTGATAAAGCTCTGGAACAGTCGTATGACCTAATAGTCTTGCCTGGTGGACTTGGTGGCGCCCAAGCTTTTGGGAAATCCGATAAGCTGATTAGTTTGCTTAAAAAACAAAGGGAATCAAATCGACCGTATGGAGCAATCTGTGCATCCCCAGCTTTGGCCCTAGAGCCTCATGGCTTACTTAAGGGCAAAAAGGCGACCGCCTTCCCCGCATTGTGCGACAAACTATCTGATCAAAGTGCAGTCGAAAACCGAGTGGTGGTTGATGGCAACCTTATTACGAGCAGAGGGCCGGGAACTTCCATCGAGTTTTCTCTAGCAATCGTGGAGAAGTTCTTAGGACGTCAAAATGCAGTGCAACTCGGAAAGACGTTTCTGTTTATACGCGAATAA 1275 46.9 MAHSYLASQSSSLFRSTLALPTLTRIPSLRNRFFCVSAAMSSTPRKVLVPIANGTEPIEAVVTIDVLRRAGADVTVASVENQLRVTAAHQVKIVADSLISDCSDAVFDLIALPGGMPGATHLRDCEVLENMVKKQASNGRLYAAICASPAVALGATCYPSFMEQLGSFATAVETLVQIDGKVVTSRGPGTTMEFSVALVDQLYGKDKADEVSGPLLMRSNHGDEYAIKDFNQVDWTINHIPRILVPIADGSEEMEALYIVDILRRAKLEVVVASVENKLEILCSRKVKIQADLLLDKALEQSYDLIVLPGGLGGAQAFGKSDKLISLLKKQRESNRPYGAICASPALALEPHGLLKGKKATAFPALCDKLSDQSAVENRVVVDGNLITSRGPGTSIEFSLAIVEKFLGRQNAVQLGKTFLFIRE 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39808596 39813144 + Bma010010.1 Bma13g00931 93660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00931 424 Pfam DJ-1/PfpI family 242 404 IPR002818 -
Bma13g00931 424 Pfam DJ-1/PfpI family 45 200 IPR002818 -
Bma13g00931 424 TIGRFAM not_thiJ: DJ-1 family protein 242 415 IPR006287 -
Bma13g00931 424 TIGRFAM not_thiJ: DJ-1 family protein 46 212 IPR006287 -
Bma13g00931 424 SUPERFAMILY Class I glutamine amidotransferase-like 241 420 IPR029062 -
Bma13g00931 424 CDD GATase1_DJ-1 47 202 - -
Bma13g00931 424 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 42 420 - -
Bma13g00931 424 PANTHER BNAA06G01020D PROTEIN 42 420 - -
Bma13g00931 424 CDD GATase1_DJ-1 243 406 - -
Bma13g00931 424 Gene3D - 237 423 IPR029062 -
Bma13g00931 424 Gene3D - 37 229 IPR029062 -
Bma13g00931 424 SUPERFAMILY Class I glutamine amidotransferase-like 44 218 IPR029062 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00931 K03152 thiJ; protein deglycase [EC:3.5.1.124] - csv:101212934 621.313
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00801 Bma-Chr8:45620472 Bma13g00931 Bma-Chr13:39808596 2.34E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g126 . . . . Bpe09g00256 . . Bma13g00931 . Cmo04g00612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00736 . . . . . . . . . Cma04g00572 . Car04g00542 . . Cpe01g00517 . . . . . . . . . . . . . . . Csa04g00801 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012103 0 3 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00931 Bma_Chr13 FPKM 20.173897 19.906776 60.439476 58.221859 12.056013 10.938516 12.239749 13.780883 12.199862 15.852534