Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00934 ATGTTACGGCAACTCTCTCTTGATCACAAGATCCAATCCCTCTTCCCCGTCGCATTGACCGCTCTTCTTCTTCTAGGAGGAGCCAGGCTACTTCTCGAAAATTCAAGGACGAACAAGCGACTGGAGGATCGAAGACGAGACAAGAATCATATGTTACCAATAGTTATATCGTCGGAGGATCGAATTGATGAAGAATGCAATGTTTTCGAAGGAGAATGGGTTTGGGATAACACGACTTACCCGCTTTATACCGAAAAGAGCTGTCCGTATTTAGTTAAACAGGTCACTTGCCAAAAGAATGGCAGACCTGATTCCTACTACAAGAACTGGAGGTGGCAGCCTAATTCATGCACATTGCCAAGGTTTGATCCATTGAAGCTTCTGGATGTGTTGAGGGGGAAAAGACTAATGTTTGTTGGGGACTCAATTCAAAGAGGGCAGTTTGAATCACTAGTCTGCATGGTTCAATCTGCAGTTCCTCAAGGGAAGAAGACCCTTCAAAAAGTTCCTCCAAAAAAGATTTTTAAAATTGAGGATTACAATGCATCGATCGAGTATTATTGGGCTCCGTTTATTGTCGAGTCGATATCTGATCATGCGACGAATCATACTGTCTTAAAACGGCTGGTGAAGCTCGACTCAATTGCCAATCACGGCGTCCATTGGGAAGGAGTTGATATGTTGGTTTTCGAGAGCTACGTTTGGTGGATGCACAAACCGTGGATCAACGCTTCATATGGAAATCCAGAGAATGTTCGAGAGTACAATGTCAGCACAGCATACAGATTGGCCTTAGAAACTTGGGCTAAATGGATATTATCAACCATTAATCCTCTCACTCAAGAAGTCTTCTTCGTGACCATGTCTCCAACACATTTATGGAGCTGGGAATGGAAGCCGGGAAGCGACGAAAACTGTTTCAACGAGTCATACCCGATCCAACATCCGTATTGGGGAACCGGATCGAGCACTGAGATTATGGAAATAGTGGGTGAAATTGTGCGAAGTCTGAAGAAAAAGGTGACACTGCTGAATATCACACAGCTATCAGAGTTCAGAAAGGATGGCCATACCTCCATTTATGGGGAAAGCAAAGGGAAGCTGTTGACAAAGGAGCAGAGATCACAGCCCAAGATCTTTGCTGATTGCATCCACTGGTGTTTGCCAGGAGTTCCCGATGCATGGAATGAACTTCTCTACGCGTATTTGCTTAAAAATCATCACAACTTTGAAGATTTTCCACGAGAATACGACATTCCACAACGTAAACTTTAA 1275 43.84 MLRQLSLDHKIQSLFPVALTALLLLGGARLLLENSRTNKRLEDRRRDKNHMLPIVISSEDRIDEECNVFEGEWVWDNTTYPLYTEKSCPYLVKQVTCQKNGRPDSYYKNWRWQPNSCTLPRFDPLKLLDVLRGKRLMFVGDSIQRGQFESLVCMVQSAVPQGKKTLQKVPPKKIFKIEDYNASIEYYWAPFIVESISDHATNHTVLKRLVKLDSIANHGVHWEGVDMLVFESYVWWMHKPWINASYGNPENVREYNVSTAYRLALETWAKWILSTINPLTQEVFFVTMSPTHLWSWEWKPGSDENCFNESYPIQHPYWGTGSSTEIMEIVGEIVRSLKKKVTLLNITQLSEFRKDGHTSIYGESKGKLLTKEQRSQPKIFADCIHWCLPGVPDAWNELLYAYLLKNHHNFEDFPREYDIPQRKL 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39826792 39828763 - Bma010013.1 Bma13g00934 93663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00934 424 Pfam PMR5 N terminal Domain 64 117 IPR025846 -
Bma13g00934 424 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 31 9 405 - -
Bma13g00934 424 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 9 405 IPR029962 GO:0016413
Bma13g00934 424 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 119 401 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00934 - - - zju:107432554 681.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01752 Bma-Chr1:57427753 Bma13g00934 Bma-Chr13:39826792 2.98E-127 dispersed
Bma02g00683 Bma-Chr2:24664631 Bma13g00934 Bma-Chr13:39826792 2.30E-18 dispersed
Bma08g01080 Bma-Chr8:49856879 Bma13g00934 Bma-Chr13:39826792 9.63E-122 dispersed
Bma13g00934 Bma-Chr13:39826792 Bma14g01046 Bma-Chr14:12493565 1.37E-97 dispersed
Bma13g00934 Bma-Chr13:39826792 Bma01g01809 Bma-Chr1:63943867 8.10E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g133 . . . . . . . Bma13g00934 Cmo16g00453 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1016 . . . . . . . . . . . . . . . . Cma16g00420 . Car16g00385 Cpe14g00355 . . . . . . . . Cla07g00950 Cam07g1025 Cec07g1095 Cco07g1074 Clacu07g0994 Cmu07g0990 Cre07g1365 . . Chy07g00964 Cme07g01334
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012140 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00934 Bma_Chr13 FPKM 2.668685 3.261716 5.758495 5.454309 5.917443 3.610566 5.367672 8.761858 7.363711 7.668979