Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00935 ATGAGGGCTTCGATGATTAGATCCGTACGGTCTGCTCTGGAGAGAACGAAATCGGCTTCTATTTCTCCCTCGCGATACCTTATGGGTCGAGGGTACGGATCGGAGGCCGTCCCGGAGCGCAAAGTGGCAGTGTTGGGAGCTGCAGGTGGGATCGGACAGCCTCTGGCGCTTCTGATGAAGCTTAACCCTTTGGTTTCCAAGCTTGCTCTCTATGATATTGCTGGTACTCCTGGTGTCGCTGCTGATGTTAGCCATGTCAACACTAGATCTGAGGTCACTGGATATGTGGGCGAGGAACAACTCGCGAAAGCTCTTGAGGGCTGTGACCTTGTCATCATTCCAGCTGGTGTACCGAGAAAACCTGGCATGACTCGTGATGATCTCTTTAACATCAATGCTGGCATTGTTAAATCTCTTTGCTCTGCTATTGCTAAGTATTGTCCTCATGCTCTTGTAAATATGATCAGCAATCCTGTAAATTCAACAGTCCCAATTGCGTCTGAGGTTTTTAAGAAAGCTGGAACATATGATGAGAAGAAGCTGTTTGGTGTCACTACCCTTGATGTGGTTAGGGCCAAGACCTTTTATGCTGGGAAGGCTAACATCCCAGTTGCTGATGTAAATGTACCAGTTGTTGGCGGACATGCTGGCATAACTATTCTTCCATTATTTTCTCAAGCCACTCCAACAGCCAATCTGTCTCATGATGTAATTGATGGTTTAACTAAGCGTACACAAGATGGAGGGACAGAGGTTGTGGAAGCAAAGGCTGGAAAAGGATCTGCTACGTTATCTATGGCCTACGCCGGCGCCATTTTTGCTGATGCTTGTCTGAAAGGATTAAACGGTGTACCCGATGTTGTGGAGTGTTCATTTGTTCAATCAAGCATCACTGAACTTCCTTTCTTCGCTTCAAAGGTAAGGCTTGGAAAGAATGGAGTTGATTCGATTATGGATTTGGGACCCCTATCAGATTACGAGAAAGAAAGCTTGGAAAAGCTGAAGCCTGAACTCAAATCTTCAATTGAGAAGGGAATTAAGTTCGCCGGTCAGAGTTAG 1059 46.27 MRASMIRSVRSALERTKSASISPSRYLMGRGYGSEAVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVSHVNTRSEVTGYVGEEQLAKALEGCDLVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPHALVNMISNPVNSTVPIASEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANIPVADVNVPVVGGHAGITILPLFSQATPTANLSHDVIDGLTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSSITELPFFASKVRLGKNGVDSIMDLGPLSDYEKESLEKLKPELKSSIEKGIKFAGQS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39833899 39836482 + Bma010014.1 Bma13g00935 93664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00935 352 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 185 348 IPR022383 GO:0016616
Bma13g00935 352 Pfam lactate/malate dehydrogenase, NAD binding domain 41 183 IPR001236 GO:0016491
Bma13g00935 352 ProSitePatterns Malate dehydrogenase active site signature. 184 196 IPR001252 GO:0006108|GO:0016615
Bma13g00935 352 SUPERFAMILY LDH C-terminal domain-like 184 350 IPR015955 GO:0003824|GO:0016616
Bma13g00935 352 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 183 IPR036291 -
Bma13g00935 352 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 41 349 IPR010097 GO:0006099|GO:0030060
Bma13g00935 352 PANTHER MALATE AND LACTATE DEHYDROGENASE 11 350 - -
Bma13g00935 352 CDD MDH_glyoxysomal_mitochondrial 41 349 IPR010097 GO:0006099|GO:0030060
Bma13g00935 352 Gene3D - 34 184 - -
Bma13g00935 352 Gene3D - 185 350 IPR015955 GO:0003824|GO:0016616
Bma13g00935 352 PIRSF Lac_mal_DH 37 349 IPR001557 GO:0016616|GO:0019752
Bma13g00935 352 PANTHER MALATE DEHYDROGENASE 11 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00935 K00026 MDH2; malate dehydrogenase [EC:1.1.1.37] - qsu:111992185 580.482
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma10g00480 Bma13g00935 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma10g00480 Bma-Chr10:5672831 Bma13g00935 Bma-Chr13:39833899 0 dispersed
Bma12g00989 Bma-Chr12:41937932 Bma13g00935 Bma-Chr13:39833899 1.18E-144 dispersed
Bma12g00996 Bma-Chr12:42032798 Bma13g00935 Bma-Chr13:39833899 1.18E-144 dispersed
Bma08g00024 Bma-Chr8:418817 Bma13g00935 Bma-Chr13:39833899 9.89E-110 transposed
Bma15g01095 Bma-Chr15:43529949 Bma13g00935 Bma-Chr13:39833899 4.47E-154 transposed
Bma14g00041 Bma-Chr14:530885 Bma13g00935 Bma-Chr13:39833899 6.56E-10 transposed
Bma10g00478 Bma-Chr10:5500083 Bma13g00935 Bma-Chr13:39833899 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g136 . . . . Bpe09g00251 . Bma10g00480 Bma13g00935 Cmo16g00450 Cmo04g00606 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1034 Cone15ag1020 . . . . Blo07g00962 Blo10g00740 Bda05g00784 . . Bpe03g00851 . . . . . Cma04g00566 Cma16g00418 Car04g00537 Car16g00383 Cpe14g00352 Cpe01g00511 . . . . . . . Cla07g00948 Cam07g1023 Cec07g1093 Cco07g1072 Clacu07g0992 Cmu07g0988 Cre07g1363 . . Chy07g00962 Cme07g01331
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004201 2 1 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00935 Bma_Chr13 FPKM 5.362306 7.009422 2.35386 1.010878 1.36528 1.874125 1.586256 0.515419 0.677951 0.557777