Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00940 ATGCGATTGTCATCTGTGGCCTCGAAGAAAAGTGGTGATCGGTCTGGCTCAAAGGTTCGAAAGAAGCACAAGAGGCTTGACGCCATATGTGAGAAAGAGTACACTCGGAATCATGTTGATTTAAATGAGGAGGGGGAAGTGGTAGGGAGTGCAAGTGTGGAATTGGAACCTAGACGTAGCTCAAGGGTTCGTCGGGCTCCTGTTTTGCTTGATGTCTCCCCACCACCATCAAAGAAGCGGAAGAAGTTTCACAGGAATGTGGTAGTAAAAGTTGAGAAGATTTCTGAGACTCTGCCGCTTGCAAGTGACAACTTGAAGGACTTTGAGACGTCAGACAGCTTGAAATCTAGGTTGAGATCAAGAACAAGAAACACAGGATTGGTGTTGGGTGAGTTTAGAGGTTTGCAAAGCCCTAAGAGGAAGCTTTTTGTCGAAATTAATGAAATTGTTGATGAAGGGAATGCATTGGTGGTAGAGGATGAAACAAAGCAATCAGAAGATGGGAAGCCTATGGTTCTTAAGTCAAACCAACCAGGGAAGATTAAGGCGATGAACTCGTCAGTGAAAGGAGAAAAGAAAAACAAGTTATTCAAAAACAAAGATGAGAGTGGGAGGGATGCAATGGAGGCAGTGGTTAATGACTGTGAGGGGAATCCTTTATTTGGAAAGGAGAAGGAAGGAACAGTGGTAATTGGCAACCAACGTGAAGAGACAGATACACTCTTCAGAAGTGAATTGTCTGTGAGAGATGAAATGGAACAAATGAATGGTAATCTTGAACCAGTAGATGAGAATGTGGAGAAAGAAATTTCAAGGGCTCTGCTCTCAGAGAACCTCAGTCATGTTGATGAAAATTTGGAAAAAGGGGATCATATAAAGGCAGTGGAACACAGGGAGAATGAAGTGGAAGAATTACAACGTGTGAATGGAGTTGAGAATGAGGTAGAAGATGAAAAAAATGGTGGAGTTTTGACTAAAGGGCAGGCAGATGAAGGGTATTGTCATGATGTGGTTGTTGATTTGGGCAATGGTACACAAATTTTAAATGTTGAAAGTGCTTTGAATGTAGCTAAGCTCATTCACTCTTCAGTTAATGTACCTAAAAAGCCTCGCATCAAAGAGGGCAGACGGTGTGGTCTATGTGGGGGAGGCACGGATGGTAAACCTCCCCAAAAATTAGCACATGATGCTGGGGACAGTGAGAGTGAGGCATATAGTGGCTCTTCAGCTGCAGAGGAACCAAACTATGATTTATGGGATGGTTTTGGTGATGAACCTGGCTGGCTTGGACGGCTTTTAGGTCCTATAAATGATCGTTATGGTATTGCTGGAATATGGGTCCATCAACACTGTGCTGTGTGGAGTCCAGAGGTGTATTTTGCTGGTTTGGGATGCTTAAAAAATGTGAGGGCAGCGCTTTGCAGAGGAAGAGCCCTGAAGTGCACTCGCTGTGGACGTCCTGGGGCAACCATTGGATGCCGTGTTGATCGATGTCCAAAAACATATCATTTGCCTTGTGCTCGTGCTAACGGCTGCATCTTTGATCATCGGAAGTTTCTCATAGCCTGCACAGATCATCGACATTTTTTTCAACCACAATATTTAACTCATATGAAGAAAATGAAGATTAAGAAAATGAAGTTGGGCTTAAGGAAGCTGTTAAATGATGCCTTGCGGAAGGATATTGAAGCAGAGGAGAAGTGGTTAGAGAATTGTGGTGAGGATGAAGAGTTTTTGAAGAGAGAGAGCAAAAGGCTTCATCGGGATTTGGCAAGAATAGCACCAATGTACATTGGAGGCTCAGACTCGGAAGGAACAAATTTATTTCAGGGTTGGGAATCTGTCGCAGGGCTTCAAAATGTCATCCGCTGTATGAAGGAAGTTGTGATTTTACCCCTTCTTTATCCTGAGTTTTTTGATGGGCTTGGTATTACACCTCCAAGGGGTGTTCTTCTGCATGGGTATCCTGGAACTGGTAAAACTCTTGTTGTGAGAGCATTAATCGGTGCTTGTGCTCGCGGTGACCGGCGTATAGCATATTTTGCTCGAAAAGGTGCAGATTGTTTGGGAAAATATGTCGGTGATGCTGAACGCCAACTCAGACTGTTGTTTCAGGTAGCTGAGAGATGTCAGCCTTCAATTATTTTCTTTGATGAAATAGATGGGCTGGCACCTTGTCGCACAAAGCAGCAGGATCAAACTCACATTTCTGTCGTGTCAACATTGCTTGCTCTGCTAGACGGTTTGAAGTCCCGTGGTTCAGTTGTTGTGATAGGTGCAACAAATCGTCCTGAAGCTGTTGATCCAGCCTTAAGGCGCCCTGGCAGATTCGATAGAGAAATATACTTTCCTCTTCCATCAGTTGAGGACCGAGCTGCTATTCTTGCACTTCACACTCAGATGTGGCCGAAGCCTGCGGCAGGAAATGTGCTCAAGTGGGTCGCTCAAAAAACTGCAGGCTTTGCTGGTGCTGATCTTCAGGCTCTCTGTACTCTAGCAGCAATCACGGCACTGAAGAGGAGTTTCCCTTTGCATGAAATTTTGTCTGCAGCTGGAGAGAGTGGTTTGTGTGGTAAACGCACTCCCCTCCCTGCCTTCTACGTAGAGGAGAGAGATTGGCTAGAGGCTGTGTCAAAGGCCCCACCTCCTTGTTCACGTAGAGAGTCAGGAATGGCTGCTAATGATATTGTCTCCTCGCCTCTTCCTGCACACCTTATTCCTTGTTTGCTTCTACCGTTGTCAACTTTGCTTGTTGCTCTTTATCTTGATGAACGGGTTTCCTTGCCACCTATTCTATCAAAAGCAGCAACAATGATAAAAGTTGTGATTGTTTCTGCACTGAATAAAAGAAACATGTCGGGTGAATACTGGTGGTGTCATGTTGATAATTTTCTTCACGAACCAGATATTGCAATTGAGATAGAGAGAAAGCTTAGGAGCTCTGGAGTTTTAGTCGGAGATACTCAGTTTCCTAGGTGTGATGATTTTAATTGTGATGATGACGTTGGTGATGATGATAGCACTCAAAGATTTAAACTTCCCTTAAAACATCATGGTGGCAGTTGTAAAAATTTAGAACACATATCATTATCCTCAAAACATATGTCAGGATTTCGCATTTTGATTGCTGGAAATCCCCAATCTGGCCAGAGACACTTGATATCTTGTCTTCTTCACTGCTTCATTGGAAATATGCAAATTCATAAGGTTGACTTGGCTACTATTTCACAGGAAGGGCAAGGAGATGTGGTGTTAGGGATCACTCTTCTGCTAAAGAAATGTGTCAGTGTTGGGTCATGCATGTTATTCATGCCTAGAATTGATCTTTGGGCTGTCAATACACATTATCTAAGTACTGCAGAGAGTGAGTTTTGTTCAGAAGATGACCAGGAAGGAGAAGAACACAAATTAACGCCAGGGGAAGAGCTCCATGATATTGTGCATATTGCTTCACAGGCCTGGATTTCTTTTGTCGATGAGGTGGATTCTTTGAGTCTCTCTACATCCTTCATAATAATGGCTACTTCAGAAATTCCATATCAGCTACTTCCTCAAAGAGTAAGGCAATTCTTTAAGAGTGATTTGTCAGACTGCAGTTTGTCAAATACTTTGGAGCACACGGTACCAAGATTCTCTGTGCAGATTGATGAGAATTTCAATGCTAATAAGGTGATCAATCTATCTGCATCACAGCTAACTAGGGAATTGGTGCAGTTACTCGTTCAATGGACTCACCAAAAATCTCACATCAATACAAAAGTCAAGGAGTACAAAACTCTCAACTCTGTTGAAGGCCGAGCGCATAATGTAGAACACAGTACCAAAAGTGAAATCAGTATTGATAACCAGGGTCTAACAAAAAATCCTGGAGAATCTTCTATCAAAGATTCTCCACTTGCTTGTACCAGAACTATCAGGGGGAAATCGAGTGTGCTTATAGCAATATCTTCATTTGGCTATCAAATTTTGAGATATCCTCATTTTGCTGAACTTTGTTGGGTGACATCAAAATTGAAAGAAGGCCCCTCTGCAGACATAAGGGGACCTTGGAAAGGATGGCCATTTAACTCGTGTATTGTTCGTCCTACTAGCTCATTAGAAAAGGTGGGAATTGGTAGTGACACTTGTGTTAAATCCCAAGGAAAATCAAGTTTAGTAAGAGGTTTAATTGCAGTTGGGTTATCTGCTTACAGAGGTGCTTACACATCACTAAGAGAAGTCTCTTTAGAGGTGCGGAAGGTTTTTGACCACCTAATGGAACAAATTAATGAGAAAATTCAAGCGGGGAAAGATAGGTATCAGTATGTTCGTCTTTTATCCCAAGTGGCTTATGTTGAAGATATGGTTAATGGCTGGGCTTACACGCTCCAGAGTTTGGAGCAGGACGCTCAGACTCCTAGAATAGCAATGAGCCAGAAGCTAATTGGTGTGAATTATCCAGAGAATATTCAAGTCTCCAGTGATAATCAGCTTCAAAGTGAGGAATGCGACCCTTCTAGAAAAGGTTCTCACGCAGCAGAAACTTTAGAAAATGGCGTATGTATGGAGATGACAAAAGTGGCTGGAGAATCAAGTAGTACTTATTCCAATGGTATGCTTGCGATTTCCAAAGATCGGTTGGAAAATTTCGTCTGGAATGATTCCTCTAATGATCGATCAAGTCTTCATCATGGTGCAGAAGATCAATTTGTTGATCATATTCAAATTGAGCAAAATGGGAGATTATCTGGCACAAATGAACAGGAAACCAATAGAAATAGTGCAGTAATTGACGCAGATTCTGAGTTGGTGCGACTTTCTAATAATTCTAACTCTCAACCTACTAGTTTTGACGAATTTGTGGGTGGTAAATTTTCGTGCTCTACAAAGGTTACTGAAATTGGTGAATTTGATGCTAAGTTTGACATTAATGATCGTTCCACAGACCCTGGTCTATCTGTGCGGACTGAGATTTTGTGTTCGTATCATTGTTGCACTGATTGTGTAAAAGCCATTCACAGCTCGACTACAAAAATTCTTACCCGGGAATTCTCGAAGGAGGACAACTGGACTATAGAGGATTTTCATGATGTTGTTTCGACCGTATCAGTGGAACTTCTTTCTGGTATAAAAAGAGCACTTTCCGGCAAAGATAACACTTGGTTTGACGAAGAGAGTGAGAATTCAAGAATCGAAGCTTATGACACTTTATTTAAGGATTCACATTTGCAACCTTGCCGTTGCACAATTCCCAAAAATACTGTTGTTGAGCCTGCAGAATGTAGTGGACACTCTAAACAAAGTGCAAGCATTGAAGCAAAATCCTCGCCAACCTCTCAATTTGGATCTGATTTTAAATTTATCTTCAGAGATGGTGTATTAGTAAGCTTAGATTCTGACAAGGATGTCTCTTTTCTCTGTAAAGTGCAGAATTTGTGCCTGTCTTCTCTTATAGAATTGATACTGAAAACCAAGAAGCCGTTTGGGTAA 5469 42.15 MRLSSVASKKSGDRSGSKVRKKHKRLDAICEKEYTRNHVDLNEEGEVVGSASVELEPRRSSRVRRAPVLLDVSPPPSKKRKKFHRNVVVKVEKISETLPLASDNLKDFETSDSLKSRLRSRTRNTGLVLGEFRGLQSPKRKLFVEINEIVDEGNALVVEDETKQSEDGKPMVLKSNQPGKIKAMNSSVKGEKKNKLFKNKDESGRDAMEAVVNDCEGNPLFGKEKEGTVVIGNQREETDTLFRSELSVRDEMEQMNGNLEPVDENVEKEISRALLSENLSHVDENLEKGDHIKAVEHRENEVEELQRVNGVENEVEDEKNGGVLTKGQADEGYCHDVVVDLGNGTQILNVESALNVAKLIHSSVNVPKKPRIKEGRRCGLCGGGTDGKPPQKLAHDAGDSESEAYSGSSAAEEPNYDLWDGFGDEPGWLGRLLGPINDRYGIAGIWVHQHCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRPGATIGCRVDRCPKTYHLPCARANGCIFDHRKFLIACTDHRHFFQPQYLTHMKKMKIKKMKLGLRKLLNDALRKDIEAEEKWLENCGEDEEFLKRESKRLHRDLARIAPMYIGGSDSEGTNLFQGWESVAGLQNVIRCMKEVVILPLLYPEFFDGLGITPPRGVLLHGYPGTGKTLVVRALIGACARGDRRIAYFARKGADCLGKYVGDAERQLRLLFQVAERCQPSIIFFDEIDGLAPCRTKQQDQTHISVVSTLLALLDGLKSRGSVVVIGATNRPEAVDPALRRPGRFDREIYFPLPSVEDRAAILALHTQMWPKPAAGNVLKWVAQKTAGFAGADLQALCTLAAITALKRSFPLHEILSAAGESGLCGKRTPLPAFYVEERDWLEAVSKAPPPCSRRESGMAANDIVSSPLPAHLIPCLLLPLSTLLVALYLDERVSLPPILSKAATMIKVVIVSALNKRNMSGEYWWCHVDNFLHEPDIAIEIERKLRSSGVLVGDTQFPRCDDFNCDDDVGDDDSTQRFKLPLKHHGGSCKNLEHISLSSKHMSGFRILIAGNPQSGQRHLISCLLHCFIGNMQIHKVDLATISQEGQGDVVLGITLLLKKCVSVGSCMLFMPRIDLWAVNTHYLSTAESEFCSEDDQEGEEHKLTPGEELHDIVHIASQAWISFVDEVDSLSLSTSFIIMATSEIPYQLLPQRVRQFFKSDLSDCSLSNTLEHTVPRFSVQIDENFNANKVINLSASQLTRELVQLLVQWTHQKSHINTKVKEYKTLNSVEGRAHNVEHSTKSEISIDNQGLTKNPGESSIKDSPLACTRTIRGKSSVLIAISSFGYQILRYPHFAELCWVTSKLKEGPSADIRGPWKGWPFNSCIVRPTSSLEKVGIGSDTCVKSQGKSSLVRGLIAVGLSAYRGAYTSLREVSLEVRKVFDHLMEQINEKIQAGKDRYQYVRLLSQVAYVEDMVNGWAYTLQSLEQDAQTPRIAMSQKLIGVNYPENIQVSSDNQLQSEECDPSRKGSHAAETLENGVCMEMTKVAGESSSTYSNGMLAISKDRLENFVWNDSSNDRSSLHHGAEDQFVDHIQIEQNGRLSGTNEQETNRNSAVIDADSELVRLSNNSNSQPTSFDEFVGGKFSCSTKVTEIGEFDAKFDINDRSTDPGLSVRTEILCSYHCCTDCVKAIHSSTTKILTREFSKEDNWTIEDFHDVVSTVSVELLSGIKRALSGKDNTWFDEESENSRIEAYDTLFKDSHLQPCRCTIPKNTVVEPAECSGHSKQSASIEAKSSPTSQFGSDFKFIFRDGVLVSLDSDKDVSFLCKVQNLCLSSLIELILKTKKPFG 1822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 39949208 39957784 - Bma010023.1 Bma13g00940 93669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00940 1822 MobiDBLite consensus disorder prediction 1271 1295 - -
Bma13g00940 1822 CDD AAA 646 785 - -
Bma13g00940 1822 MobiDBLite consensus disorder prediction 381 412 - -
Bma13g00940 1822 Gene3D - 612 886 IPR027417 -
Bma13g00940 1822 ProSiteProfiles Extended PHD (ePHD) domain profile. 407 527 IPR034732 -
Bma13g00940 1822 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 54 1818 - -
Bma13g00940 1822 Pfam ATPase family associated with various cellular activities (AAA) 650 785 IPR003959 GO:0005524|GO:0016887
Bma13g00940 1822 PANTHER AAA DOMAIN-CONTAINING 54 1818 IPR045199 -
Bma13g00940 1822 ProSitePatterns AAA-protein family signature. 755 773 IPR003960 GO:0005524|GO:0016887
Bma13g00940 1822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 428 529 IPR013083 -
Bma13g00940 1822 Gene3D - 786 878 - -
Bma13g00940 1822 Pfam PHD-like zinc-binding domain 448 527 - -
Bma13g00940 1822 SMART AAA_5 646 787 IPR003593 -
Bma13g00940 1822 MobiDBLite consensus disorder prediction 1 26 - -
Bma13g00940 1822 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 883 IPR027417 -
Bma13g00940 1822 MobiDBLite consensus disorder prediction 1276 1295 - -
Bma13g00940 1822 Pfam AAA+ lid domain 811 843 IPR041569 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00940 - - - zju:107432546 1874.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01415 Bma-Chr6:50898979 Bma13g00940 Bma-Chr13:39949208 1.25E-77 dispersed
Bma13g00940 Bma-Chr13:39949208 Bma07g00158 Bma-Chr7:2189370 2.10E-41 dispersed
Bma13g00940 Bma-Chr13:39949208 Bma04g00594 Bma-Chr4:5692182 1.36E-39 transposed
Bma13g00940 Bma-Chr13:39949208 Bma01g01930 Bma-Chr1:71340196 2.28E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002378 1 1 1 1 1 2 1 2 3 1 2 2 1 1 3 1 2 2 1 2 3 3 2 2 7 2 1 5 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00940 Bma_Chr13 FPKM 0.555961 0.499941 0.0 0.0 0.0 0.0 0.0 0.0 0.035955 0.0