Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00942 ATGTTTAATGGGGATATGTCTGAGCTCAAAGGATTTCATCATCTTGTTATATTCAATATAAGCTACAACTCTTTCACTGGCCAGTTCAATTCTCAAATTTGCAATACTTCTGATGGGATTCAAGTTCTTGATATTGCAGTTAACCGATTCTCGGGTACTTTGGAAGGTTTGAACTACTGTAGCTCATCTCTCAAACAATTTCATGCAGATTATAATCTTTTTGGAGGTCGTTTTCCAGAATCTTTTTATTCGTTGATCAGTTTGGAGCGTCTTTCACTTTCCGGTAACAACTTTTCCGGCCATTTGAGCGAAGAATTGAGTAAGCTCTCGAGCCTTAAATCCCTTGTTATTTTTGTAAATCAACTTTCTGGTGAACTTCCCAATGTTTTTGGGAATCTGACTGAGTTAGAAGAGTTAACTGCTCATTCAAATTTGTTTTCTGGGCAATTGCCTTCAAGCCTCTCACTTTGCTTGAAGCTTGGAGTGCTTGATCTTAGAAACAATTCTTTTAGTGGAGATATTGGACTTAATTTTACTGGACTTCTCAATCTTCATACACTGGATCTTGCCTCTAATCGCTTTTATGGCGCTCTTCCTAATTCTCTCTCGAATTGCCAGGAATTGAAAATTTTAAGTCTTGCCAGAAACAAATTTGCAGGCCGAATTCCAGAAAATTATGCAAAGCTTTCCTCTCTATGGTTTCTCTCCTTGTCTAACAACAGCTTGGTGAGCTTAGATGGGGCATTATCTGTGCTACAGCACTGTAGAAATCTTACAACTCTTATACTTACAGAGAATTTCCATGGTGAAGAAATTCCAAAAAGTGATTCTAGATTTGAGAATTTGATCATTTTGGCTCTCGGAAATTGTGGTCTTAAGGGTCAGATTCCAGTTTGGTTATTGAATTGCCAGAGGTTAAGTGTTCTTGATTTGTCTTGGAATCGCCTGACGGGAAGCATACCTCCGTGGATCGGACATATGAAGAGTTTATTTTACATGGATTTTTCGAACAATTCTCTTACCGGAGAGATCCCAAAAAGTTTGGTCAAGATGACGACACTTACTCTTGGAGGATGCAGTTTTTCGAATCCAGCATCGTCCGGCATACCTTTATACGTAAAGCGTAATCAGAGTTCTACTGGTTTGCCGTATAATCAGGTATCGAGTTTTCCAACATCGATTTATTTGAGCAGCAATGCACTAAATGGGACAATTTGGCCTGAAATTGGGCAACTAAAACAGCTGCATGTTTTGGATTTGAGCCATAATGGAATTTCCGGAACAATCCCTTGGTCGATATCAGAGATGGAGAATCTAGAAGTGTTGGATTTATCGAACAACAATCTTTCCGGAAGAATTCCTCCATCGTTTAACAAGCTTACGTTTCTGTCAAGGTTCAGTGTGGCATATAATCACTTGGAGGGAGAAATTCCGACCGGAGGACAATTCTTAAGCTTTTCGGCGTCGAGCTTCGAGGGTAATCCTGGACTTTGTGGCAAAATATTTTCTCCATGTGAGGAAGTCGATAGAATTGGAAGAAATCCAAAACGAGTTGCTGATTCCAACTCCGTATTTAGTGGTAGAAGCATCATTTGCATAACATTAATAGCAGGAATAGGAATTGCTTTGCTTCTAATGATTATTTGGCTCAAGATGTCAAAGAAGAGTGCAAAATTTCAGATAGAGGATTTCACGGAGGAACTAGGCCGACCCCGCCGATTATCCGAAGCTCACTGTTCATCAAAGTTGGTGCTTTTTCAAAATTCAGAGTGTAAAGATCTTTCAATTGCAGGCTTGATAAAAGCAACAAATAACTTCAGCCAAGCAAACATAATTGGGTGTGGAGGATTTGGTCTAGTTTATAAAGCCAACCTCTCCGATGGCACAAAAGTTGCCGTCAAGAGACTTTCTGGCGATTGTGGTCAGATGGAACGGGAATTCCAGGCCGAAGTTGAAGCTTTGTCTCGAGCTCAACACAAGAATCTTGTTTCTCTTCAAGGGTATTGCCAAAATGGAAATGACAGACTATTGATATATTCCTTCATGGAAAATGGAAGCATGGACTATTGGCTTCACGAGAATATCGACGACAGCTCGTCTCTGAACTGGGAAACTCGGTTTAGAATTGCGCAGGGTTCTGCCCGTGGATTAGCTTACTTGCATAAGGAATGCAAGCCAAACATAATTCACAGAGACGTGAAATCGAGCAATATATTATTAGATGAAAACTTCAACGCCCATTTGGCCGATTTTGGTCTTTCTCGTCTTCTTCGTCCTTACGATACGCATGTTACGACCGATTTGGTCGGGACTTTGGGTTATATTCCTCCAGAGTATAGTCAGACTCTAACTGCAACTTTCAGGGGTGATGTTTATAGTTTTGGTGTAGTTCTTCTCGAGCTTCTGACGGGTCGGCGGCCCGTGGAAGTATGCAAAGGGAAAAATTGTCGAGATTTGGTGTCGTGGGTGATGCATATGAAAGCCGAGAAGAGGGAGAAAGAGGTTATTAGTTCTGAAATATGGGACAAGGACCATGAGAGGGAGCTCTTAATGGTGCTTGATATTGCTTGTAAATGCATTGACATGGATCCAAGGAGGAGACCTTCCATTGAAGAAGTTGTTTCTTGGCTTGATAGTGTTGAATTTCAGGCTTCCCAGCTGTGA 2664 40.84 MFNGDMSELKGFHHLVIFNISYNSFTGQFNSQICNTSDGIQVLDIAVNRFSGTLEGLNYCSSSLKQFHADYNLFGGRFPESFYSLISLERLSLSGNNFSGHLSEELSKLSSLKSLVIFVNQLSGELPNVFGNLTELEELTAHSNLFSGQLPSSLSLCLKLGVLDLRNNSFSGDIGLNFTGLLNLHTLDLASNRFYGALPNSLSNCQELKILSLARNKFAGRIPENYAKLSSLWFLSLSNNSLVSLDGALSVLQHCRNLTTLILTENFHGEEIPKSDSRFENLIILALGNCGLKGQIPVWLLNCQRLSVLDLSWNRLTGSIPPWIGHMKSLFYMDFSNNSLTGEIPKSLVKMTTLTLGGCSFSNPASSGIPLYVKRNQSSTGLPYNQVSSFPTSIYLSSNALNGTIWPEIGQLKQLHVLDLSHNGISGTIPWSISEMENLEVLDLSNNNLSGRIPPSFNKLTFLSRFSVAYNHLEGEIPTGGQFLSFSASSFEGNPGLCGKIFSPCEEVDRIGRNPKRVADSNSVFSGRSIICITLIAGIGIALLLMIIWLKMSKKSAKFQIEDFTEELGRPRRLSEAHCSSKLVLFQNSECKDLSIAGLIKATNNFSQANIIGCGGFGLVYKANLSDGTKVAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCQNGNDRLLIYSFMENGSMDYWLHENIDDSSSLNWETRFRIAQGSARGLAYLHKECKPNIIHRDVKSSNILLDENFNAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVCKGKNCRDLVSWVMHMKAEKREKEVISSEIWDKDHERELLMVLDIACKCIDMDPRRRPSIEEVVSWLDSVEFQASQL 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40154326 40156989 - Bma010030.1 Bma13g00942 93671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00942 887 SMART serkin_6 606 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00942 887 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Bma13g00942 887 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 389 453 - -
Bma13g00942 887 Gene3D Ribonuclease Inhibitor 393 505 IPR032675 -
Bma13g00942 887 CDD STKc_IRAK 612 878 - -
Bma13g00942 887 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Bma13g00942 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 728 740 IPR008271 GO:0004672|GO:0006468
Bma13g00942 887 Gene3D Ribonuclease Inhibitor 252 374 IPR032675 -
Bma13g00942 887 PANTHER PHYTOSULFOKINE RECEPTOR 2 117 272 - -
Bma13g00942 887 SUPERFAMILY L domain-like 381 498 - -
Bma13g00942 887 Gene3D Transferase(Phosphotransferase) domain 1 682 885 - -
Bma13g00942 887 SUPERFAMILY RNI-like 8 352 - -
Bma13g00942 887 SUPERFAMILY Protein kinase-like (PK-like) 589 877 IPR011009 -
Bma13g00942 887 Gene3D Phosphorylase Kinase; domain 1 570 681 - -
Bma13g00942 887 Pfam Protein kinase domain 607 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00942 887 Pfam Leucine Rich Repeat 306 326 IPR001611 GO:0005515
Bma13g00942 887 ProSiteProfiles Protein kinase domain profile. 606 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma13g00942 887 PANTHER PHYTOSULFOKINE RECEPTOR 2 271 369 - -
Bma13g00942 887 ProSitePatterns Protein kinases ATP-binding region signature. 612 634 IPR017441 GO:0005524
Bma13g00942 887 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 117 272 - -
Bma13g00942 887 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 449 880 - -
Bma13g00942 887 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 271 369 - -
Bma13g00942 887 PANTHER PHYTOSULFOKINE RECEPTOR 2 389 453 - -
Bma13g00942 887 PANTHER PHYTOSULFOKINE RECEPTOR 2 449 880 - -
Bma13g00942 887 SMART LRR_typ_2 229 252 IPR003591 -
Bma13g00942 887 SMART LRR_typ_2 436 459 IPR003591 -
Bma13g00942 887 SMART LRR_typ_2 133 157 IPR003591 -
Bma13g00942 887 SMART LRR_typ_2 303 327 IPR003591 -
Bma13g00942 887 SMART LRR_typ_2 181 205 IPR003591 -
Bma13g00942 887 SMART LRR_typ_2 85 109 IPR003591 -
Bma13g00942 887 Gene3D Ribonuclease Inhibitor 1 245 IPR032675 -
Bma13g00942 887 PRINTS Leucine-rich repeat signature 436 449 - -
Bma13g00942 887 PRINTS Leucine-rich repeat signature 306 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02515 Bma-Chr1:82814345 Bma13g00942 Bma-Chr13:40154326 1.22E-77 dispersed
Bma13g00647 Bma-Chr13:15848796 Bma13g00942 Bma-Chr13:40154326 7.78E-06 dispersed
Bma13g00942 Bma-Chr13:40154326 Bma15g00052 Bma-Chr15:688185 9.03E-06 dispersed
Bma14g01531 Bma-Chr14:30950777 Bma13g00942 Bma-Chr13:40154326 1.45E-09 dispersed
Bma13g00942 Bma-Chr13:40154326 Bma09g00155 Bma-Chr9:5397708 8.27E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66856 PF00069 Pkinase 7.20E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00942 - - pdul:117625018 1231.08