Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma13g00947 ATGGCGACAACTTCAGCAGTATCCGTTGCCATGAACGGAGGAGTACGCGTCGCTGCATCCTTGCATTCGCAGGCTTATTTGGAGGGAAAAGCTGTAAATGATACCAAGGTTCTAATATCGGAGCTCTGCCGCCAATTCTATAACCTCGGATGGGTCTCCGGTACCGGTGGCAGTATCACTCTGAAGGTCCATGATGACTCTATTCCTAAACCCAATCAGCTGATTGTCATGTCCCCTTCTGGTGTTCAGAAGGAGAGAATGGTGCCAGAGGACATGTATGTAATGTCTTCCAGTGGATCTATCCTGTCCTCACCTATTCCAAAGCCATATCCTCATAAGCCTCCAAAGTGTTCTGATTGCGGTCCACTTTTTATGAAGGCCTATTCAATGCGAAATGCAGGAGCTGTCATACATAGTCATGGATTAGAGTCCTGTCTTGTCACCATGATCAATCCATCATCTAAAGAGTTTCGAATAACTCACATGGAAATGATAAAAGGAATTCAAGGGCATGGATATTATGACGAACTTGTGGTGCCAATCATAGAGAACACTGCATATGAATATGAGCTCACAGAATCTCTTGCTAAAGCTATTGAAGCATACCCGAAAACAACAGCTGTGCTTGTTCGCAATCACGGTATTTATATATGGGGCGATTCATGGATAAGTACCAAAACGCAGGCTGAATGTTATCACTATCTCTTTGACGCTGCTCTCAAGCTTCACCAACTGGGCCTTGACTGGTCTACTCCAAATCATGGTCCTATTCAGAGAGGCAAAGAAATTTCTGCTAAATCTGGGACTCTGGATTTAACTCATACAATTGAGCCATTGTCTTTGCAGCGCTGCATTGTCCTTGACATTGAAGGAACTACTACTCCTATATCATTTGTGACTGATATTCTCTTTCCTTATGCCCGTGATAATGTTGGGAAGCACTTATCTTTAACCTTTCACACTCCAGAAACTCAAGAAGACATTAAGTTGTTGCGTGATCAGGCTCAAAATGACTTGGAAAATGGAATTACTGGTGCTGTTCCTATTCCTCCAGAGAATTCAGGGAAAGAGGAGGTGATTGAAGCAGTGGTTGCTAATGTTGCAGCGATGATAAAAGCCGACAGGAAAATTACTGCCTTGAAACAACTGCAAGGCCACATATGGAGAACTGGTTTTGAACAGGGTGAACTGGAGGGAGTAGTCTTTGAGGACGTACCAGTAGCTCTTGAAAGGTGGCATGCTTTGGGCATAAAGGTCTACATATACTCCAGCGGTAGCAGGCTGGCGCAAAGGCTTTTATTCGGAAAGACCAAGTATGGCGATTTGAGAAAATATTTATCCGGGTTTTTTGATACGACCGTGGGGAACAAAAGAGAAGTAAACAGCTATGTTGAAATCTCAGAATACCTTGGCGTCAAGCCATCAGAGATTCTGTTTCTAACTGATGTCTTTCAAGAAGCTACAGCAGCAAAGGCTGCAGGATTGGAATCGATTATTTCTATCCGACCCGGAAATGGACCTCTTCCGGATAACCATGGATTCAAGACGATCACTTCTTTCTCAGAAATCTGA 1572 43.7 MATTSAVSVAMNGGVRVAASLHSQAYLEGKAVNDTKVLISELCRQFYNLGWVSGTGGSITLKVHDDSIPKPNQLIVMSPSGVQKERMVPEDMYVMSSSGSILSSPIPKPYPHKPPKCSDCGPLFMKAYSMRNAGAVIHSHGLESCLVTMINPSSKEFRITHMEMIKGIQGHGYYDELVVPIIENTAYEYELTESLAKAIEAYPKTTAVLVRNHGIYIWGDSWISTKTQAECYHYLFDAALKLHQLGLDWSTPNHGPIQRGKEISAKSGTLDLTHTIEPLSLQRCIVLDIEGTTTPISFVTDILFPYARDNVGKHLSLTFHTPETQEDIKLLRDQAQNDLENGITGAVPIPPENSGKEEVIEAVVANVAAMIKADRKITALKQLQGHIWRTGFEQGELEGVVFEDVPVALERWHALGIKVYIYSSGSRLAQRLLFGKTKYGDLRKYLSGFFDTTVGNKREVNSYVEISEYLGVKPSEILFLTDVFQEATAAKAAGLESIISIRPGNGPLPDNHGFKTITSFSEI 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 40420733 40427136 + Bma010037.1 Bma13g00947 93676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma13g00947 523 Hamap Enolase-phosphatase E1 [ENOPH1]. 283 523 IPR027511 GO:0019509
Bma13g00947 523 SFLD enolase-phosphatase 283 522 IPR023943 GO:0000287|GO:0019509|GO:0043874
Bma13g00947 523 Gene3D - 393 523 IPR023214 -
Bma13g00947 523 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 10 523 IPR017714 GO:0005737|GO:0019509|GO:0046872
Bma13g00947 523 Gene3D - 296 392 - -
Bma13g00947 523 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 24 523 IPR027505 -
Bma13g00947 523 SFLD C1.5.4: Enolase-phosphatase Like 283 522 - -
Bma13g00947 523 Hamap Enolase-phosphatase E1 [mtnC]. 281 523 IPR023943 GO:0000287|GO:0019509|GO:0043874
Bma13g00947 523 SUPERFAMILY HAD-like 283 523 IPR036412 -
Bma13g00947 523 SUPERFAMILY AraD/HMP-PK domain-like 34 253 IPR036409 -
Bma13g00947 523 Pfam Class II Aldolase and Adducin N-terminal domain 39 239 IPR001303 -
Bma13g00947 523 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 24 248 IPR027514 GO:0005737|GO:0019509|GO:0046872
Bma13g00947 523 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 39 245 IPR017714 GO:0005737|GO:0019509|GO:0046872
Bma13g00947 523 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 10 523 - -
Bma13g00947 523 CDD HAD_EP 284 504 IPR023943 GO:0000287|GO:0019509|GO:0043874
Bma13g00947 523 SMART Aldolase_II_2 37 240 IPR001303 -
Bma13g00947 523 Gene3D - 32 257 IPR036409 -
Bma13g00947 523 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 283 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma13g00947 K16054 DEP1; methylthioribulose 1-phosphate dehydratase / enolase-phosphatase E1 [EC:4.2.1.109 3.1.3.77] - jre:108992851 834.328
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma13g00947 Bma-Chr13:40420733 Bma13g00951 Bma-Chr13:40624345 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g201 . . . . Bpe09g00237 . . Bma13g00947 Cmo16g00433 . Cma01g01212 . Car01g01036 . Sed04g2403 . Cpe02g00698 Bhi09g03436 Tan01g0815 . . Hepe01g1391 . . Cla11g01757 Cam11g1824 Cec11g1844 Cco11g1851 Clacu11g1984 Cmu11g1794 Cre11g2201 Cone6ag0152 Cone9ag0177 . Cone15ag1052 Lsi04g02067 Csa04g02338 Chy07g00069 . . Blo10g00760 . Bda12g00837 . . . . . Cmo01g01266 . . Cma16g00399 . Car16g00364 Cpe14g00336 . . . . . . . . . . . . . . . . . Chy06g01160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma13g00947 Bma_Chr13 FPKM 2.68411 3.072233 5.795619 6.212199 4.643528 3.79621 4.886124 7.660843 7.076365 7.508132